RepeatMasker started 26-Feb-2025 06:14:40 PST

RepeatMasker version open-4.0.9
Search Engine: NCBI/RMBLAST [ 2.14.1+ ]
Master RepeatMasker Database: /u3/local/rmserver/share/Libraries/RepeatMaskerLib.embl ( Complete Database: CONS-Dfam_3.0 )



analyzing file /usr/local/rmserver/tmp/RM2_klp7_K11D9.1a.1.fasta_1740579280

Checking for E. coli insertion elements
identifying Simple Repeats in batch 1 of 1
identifying matches to caenorhabditis elegans sequences in batch 1 of 1
identifying Simple Repeats in batch 1 of 1
processing output: 
cycle 1 
cycle 2 
cycle 3 
cycle 4 
cycle 5 
cycle 6 
cycle 7 
cycle 8 
cycle 9 
cycle 10 
Generating output... 
masking
done
5.42user 1.22system 0:06.79elapsed 97%CPU (0avgtext+0avgdata 799948maxresident)k
32inputs+464outputs (1major+750469minor)pagefaults 0swaps

Summary:

==================================================
file name: RM2_klp7_K11D9.1a.1.fasta_1740579280
sequences:             1
total length:       5075 bp  (5075 bp excl N/X-runs)  
GC level:         43.65 %
bases masked:        570 bp ( 11.23 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
Retroelements            0            0 bp    0.00 %
   SINEs:                0            0 bp    0.00 %
   Penelope              0            0 bp    0.00 %
   LINEs:                0            0 bp    0.00 %
    CRE/SLACS            0            0 bp    0.00 %
     L2/CR1/Rex          0            0 bp    0.00 %
     R1/LOA/Jockey       0            0 bp    0.00 %
     R2/R4/NeSL          0            0 bp    0.00 %
     RTE/Bov-B           0            0 bp    0.00 %
     L1/CIN4             0            0 bp    0.00 %
   LTR elements:         0            0 bp    0.00 %
     BEL/Pao             0            0 bp    0.00 %
     Ty1/Copia           0            0 bp    0.00 %
     Gypsy/DIRS1         0            0 bp    0.00 %
       Retroviral        0            0 bp    0.00 %

DNA transposons          3          552 bp   10.88 %
   hobo-Activator        0            0 bp    0.00 %
   Tc1-IS630-Pogo        1          293 bp    5.77 %
   En-Spm                0            0 bp    0.00 %
   MuDR-IS905            0            0 bp    0.00 %
   PiggyBac              0            0 bp    0.00 %
   Tourist/Harbinger     0            0 bp    0.00 %
   Other (Mirage,        0            0 bp    0.00 %
    P-element, Transib)

Rolling-circles          0            0 bp    0.00 %

Unclassified:            0            0 bp    0.00 %

Total interspersed repeats:         552 bp   10.88 %


Small RNA:               0            0 bp    0.00 %

Satellites:              0            0 bp    0.00 %
Simple repeats:          1           18 bp    0.35 %
Low complexity:          0            0 bp    0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element
                                                      

The query species was assumed to be caenorhabditis elegans
RepeatMasker Combined Database: Dfam_3.0
                                         
run with rmblastn version 2.14.1+

Results