
                                   position in query-                          -position in repeat-
          %    %    %    query                        C matching repeat        (left)  end   begin  linkage
+ score  div. del. ins.  sequence  begin  end  (left) + repeat   class/family  begin   end   (left) id/graphic

+  603   16.3  8.9  3.2  klp7        265   410 (4665) + CELE2    DNA                1    154  (171)   1

ANNOTATION EVIDENCE:
  603  16.28 8.90 3.25  klp7        265   410   4665 + CELE2    DNA                1    154    171    
603 16.28 8.90 3.25 klp7 265 410 (4665) CELE2#DNA 1 154 (171) m_b1s001i0

  klp7                 265 TATTACTCAGATGTCAAACTTTTTCGTTTTTTTGAACTCGAAAATACGAT 314
                                 i    i - i  v    v  v     ---i i i        i 
  CELE2#DNA              1 TATTACCCAGACG-CGAAATTTTGCGATTTTT---GCCCAAAAATACGGT 46

  klp7                 315 -------CCCGACGCGACAA-TTTTTGTAATATGCAAAAAGGCGTGCGCC 356
                           ------- i    i      -       v v           i       
  CELE2#DNA             47 ACCCGGTCTCGACACGACAAATTTTTGTTAAATGCAAAAAGGTGTGCGCC 96

  klp7                 357 TTTGAAGAGTACTGTAACTTCCTAACTTCC---ACCACG--ATTTTCATC 401
                              i             i   v-     i ---i ii  --         
  CELE2#DNA             97 TTTAAAGAGTACTGTAATTTCA-AACTTTCGTTGCTGCGGAATTTTCATC 145

  klp7                 402 GATTATTCA 410
                               v    
  CELE2#DNA            146 GATTTTTCA 154

Matrix = 20p43g.matrix
Kimura (with divCpGMod) = 17.07
Transitions / transversions = 2.29 (16/7)
Gap_init rate = 0.06 (9 / 145), avg. gap size = 2.00 (18 / 9)

+  935   18.9  8.9  4.2  klp7        463   755 (4320) C CELE1    DNA/TcMar-Tc1   (23)    306      1   2

ANNOTATION EVIDENCE:
  935  18.89 8.87 4.25  klp7        463   755   4320 C CELE1    DNA/TcMar-Tc1      1    306     23    
935 18.89 8.87 4.25 klp7 463 755 (4320) C CELE1#DNA/TcMar-Tc1 (23) 306 1 m_b1s001i1

  klp7                 463 AAAATAGCGTCTTGTGCAACATATTTGACGCACAAAATATCTCTTAAGTT 512
                            i   -    v   i                i           ----  -
C CELE1#DNA/TcM        306 AGAAT-GCGTATTGCGCAACATATTTGACGCGCAAAATATCTC----GT- 263

  klp7                 513 AGCGAAAACTACAGTAATTCT---AATTCTTTTTTTTCCATTTTCATTCG 559
                                                ---   vvi vi v vv ii  vii ivi
C CELE1#DNA/TcM        262 AGCGAAAACTACAGTAATTCTTTAAATGACTACTGTAGCGCTTGTGTCGA 213

  klp7                 560 TTTCTTCGCATAATTTTCTCATT---TTTATTTTTATTTTAATATT--TT 604
                              vivv  vii      vv v ---        ii----    ? --? 
C CELE1#DNA/TcM        212 TTTACGGGCTCGATTTTCGAAATGAATTTATTTTCG----AATANTGANT 167

  klp7                 605 AGCGATAGTAAAGTAAAATTTTAATCCATC--------CGA--GCCCGTA 644
                            -     v v -- v          i   i--------   --       
C CELE1#DNA/TcM        166 A-CGATATTCA--TTAAATTTTAATTCATTTCGAAAATCGANAGCCCGTA 120

  klp7                 645 AATCGAC--------TACAGTAGTCATTTATAAAGTTACTGTAGCTTTCG 686
                                  --------               v i i         i     
C CELE1#DNA/TcM        119 AATCGACACAAGCGCTACAGTAGTCATTTAAAGAATTACTGTAGTTTTCG 70

  klp7                 687 TTACAAGATATTTTGCGCGTCAAATATGTTGTGTGAGACGCATTATCATA 736
                           i   i                          i ii v       v   v 
C CELE1#DNA/TcM         69 CTACGAGATATTTTGCGCGTCAAATATGTTGCGCAATACGCATTCTCAGA 20

  klp7                 737 ATTCTGTGTTGTAGTAATA 755
                              i      viv      
C CELE1#DNA/TcM         19 ATTTTGTGTTCCCGTAATA 1

Matrix = 20p43g.matrix
Kimura (with divCpGMod) = 18.13
Transitions / transversions = 1.12 (28/25)
Gap_init rate = 0.07 (19 / 292), avg. gap size = 2.05 (39 / 19)

+  466   15.4 11.5  2.4  klp7        795   907 (4168) + CELE2    DNA              167    289   (36)   3

ANNOTATION EVIDENCE:
  466  15.42 11.50 2.44  klp7        795   907   4168 + CELE2    DNA              167    289     36    
466 15.42 11.50 2.44 klp7 795 907 (4168) CELE2#DNA 167 289 (36) m_b1s001i2

  klp7                 795 AGTAAATGAAAAC--TGAAAATTCCGC-----------TTTGCAGTTAGA 831
                            i     i   v --            -----------    v i   v 
  CELE2#DNA            167 AATAAATAAAATCGATGAAAATTCCGCAGCAACGAAAGTTTGAAATTACA 216

  klp7                 832 GTTACTATTTAAAGGCGCATACACAATTTTGCATTCAACCAAAATTTTTC 881
                             -   v            --   vv   i     i   v       v  
  CELE2#DNA            217 GT-ACTCTTTAAAGGCGCA--CACCTTTTCGCATTTAACAAAAATTTGTC 263

  klp7                 882 GTGTCGAGACCTGGTATCGTACGTTT 907
                                      v    i    iv   
  CELE2#DNA            264 GTGTCGAGACCGGGTACCGTATTTTT 289

Matrix = 20p43g.matrix
Kimura (with divCpGMod) = 16.29
Transitions / transversions = 0.70 (7/10)
Gap_init rate = 0.04 (5 / 112), avg. gap size = 3.20 (16 / 5)

+   16    0.0  0.0  0.0  klp7       1115  1132 (3943) + (C)n     Simple_repeat      1     18    (0)   4

ANNOTATION EVIDENCE:
   16   0.00 0.00 0.00  klp7       1115  1132   3943 + (C)n     Simple_repeat      1     18      0    
16 0.00 0.00 0.00 klp7 1115 1132 (3943) (C)n#Simple_repeat 1 18 (0) m_b1s252i0

  klp7                1115 CCCCCCCCCCCCCCCCCC 1132
                                             
  (C)n#Simple_r          1 CCCCCCCCCCCCCCCCCC 18

Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 17), avg. gap size = 0.0 (0 / 0)