+ 39 2.3 4.4 0.0 etv6flanking 441 485 (61777) + (TC)n Simple_repeat 1 47 (0) 1
ANNOTATION EVIDENCE:
39 2.27 4.44 0.00 etv6flanking 441 485 61777 + (TC)n Simple_repeat 1 47 0
39 2.27 4.44 0.00 etv6flanking 441 485 (61777) (TC)n#Simple_repeat 1 47 (0) c_b1s251i0
etv6flanking 441 TCTCTCTCTCTCT-TTTC-CTCTCTCTCTCTCTCTCTCTCTCTCTCT 485
- i -
(TC)n#Simple_ 1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 47
Matrix = Unknown
Transitions / transversions = 1.00 (1/0)
Gap_init rate = 0.05 (2 / 44), avg. gap size = 1.00 (2 / 2)
+ 46 28.9 2.5 1.3 etv6flanking 493 649 (61613) + (CT)n Simple_repeat 1 159 (0) 2
ANNOTATION EVIDENCE:
46 28.90 2.55 1.26 etv6flanking 493 649 61613 + (CT)n Simple_repeat 1 159 0
46 28.90 2.55 1.26 etv6flanking 493 649 (61613) (CT)n#Simple_repeat 1 159 (0) m_b1s252i0
etv6flanking 493 CTCTCTCTCTTTACCAC-CTC-CCCTCTTTCTCTCTCTCTCTCTACCACC 540
i vi v - - i i vi v i
(CT)n#Simple_ 1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 50
etv6flanking 541 CCCTCTCTCTTTACCTCTCGCGCTCTCTCTCTACTC-CCCTCCCACCCTC 589
i i vi v v - - i i v i
(CT)n#Simple_ 51 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCTCTCTC 99
etv6flanking 590 TCTTTGCCTCGCTCCCCCCGCCGCCCATCTCTCTC-CCCACCCCCCCTCT 638
i vi v i i ivi v i - - i v i i i
(CT)n#Simple_ 100 TCTCTCTCTCTCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCT 148
etv6flanking 639 CTCTCTCTCTC 649
(CT)n#Simple_ 149 CTCTCTCTCTC 159
Matrix = Unknown
Transitions / transversions = 1.77 (23/13)
Gap_init rate = 0.04 (6 / 156), avg. gap size = 1.00 (6 / 6)
+ 114 26.6 4.7 3.5 etv6flanking 759 1296 (60966) + (CAGA)n Simple_repeat 1 544 (0) 3
ANNOTATION EVIDENCE:
114 26.65 4.65 3.49 etv6flanking 759 1296 60966 + (CAGA)n Simple_repeat 1 544 0
114 26.65 4.65 3.49 etv6flanking 759 1296 (60966) (CAGA)n#Simple_repeat 1 544 (0) m_b1s252i1
etv6flanking 759 CAGATACACA-AC-GACAGACACAAATGACTGACCGACGGACACACA-AC 805
i v - - v v - v v i v -
(CAGA)n#Simpl 1 CAGACAGACAGACAGACAGACAGACA-GACAGACAGACAGACAGACAGAC 49
etv6flanking 806 -GACAGACATAACTGACAGACAGACA-AC-GACAGACACACGTGACATAT 852
- -i v - - v -v v i
(CAGA)n#Simpl 50 AGACAGACA-GACAGACAGACAGACAGACAGACAGACAGAC-AGACAGAC 97
etv6flanking 853 AGATATACATAACTGACTGACCGACACACA-AC-GACAGACACAACTGAC 900
i v -i v v v v - - -i v
(CAGA)n#Simpl 98 AGACAGACA-GACAGACAGACAGACAGACAGACAGACAGACA-GACAGAC 145
etv6flanking 901 TGACAGACAATGACAGACACACGTGACATACATACATGACTGACTGACTG 950
v - - v -v v v - v v v
(CAGA)n#Simpl 146 AGACAGAC-A-GACAGACAGAC-AGACAGACAGACA-GACAGACAGACAG 191
etv6flanking 951 ACACACA-AC-GACGGACACAAGTGACATACCGACGGACACACA-AC-GA 996
v - - i -i vv v v i v - -
(CAGA)n#Simpl 192 ACAGACAGACAGACAGACA-GACAGACAGACAGACAGACAGACAGACAGA 240
etv6flanking 997 CAGACACAAGTGACATACATACACATA-ACTGACGGACCTACAGACACAT 1045
-i vv v v v i - v i vv v i
(CAGA)n#Simpl 241 CAGACA-GACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGAC 289
etv6flanking 1046 A-ACTGACGGCCCTACATACACACAGCTACAGACACACCTGACGGACATA 1094
- v i v vv v v -- v - v i v
(CAGA)n#Simpl 290 AGACAGACAGACAGACAGACAGACAG--ACAGACAGA-CAGACAGACAGA 336
etv6flanking 1095 CATA-TTACTGACGGACCTACAGACACACAATGACATGCATAAGTGAAGG 1143
v -vv v i vv v - - vi -i vv vi
(CAGA)n#Simpl 337 CAGACAGACAGACAGACAGACAGACAGAC-A-GACAGACA-GACAGACAG 383
etv6flanking 1144 ACTGACGGACACACA-ACTGACGGGCCTACGGACACACA-AC-GACATCA 1190
v i v - v i i vv i v - - -v
(CAGA)n#Simpl 384 ACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACA-GA 432
etv6flanking 1191 TTGACAGACCGACGGACACATA-AC-GACAGACACACA-ACTGACTGACG 1237
iv v i v i - - v - v v i
(CAGA)n#Simpl 433 CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACA 482
etv6flanking 1238 GACATATA-ATAGATACAACTGACGAACACACA-ACTGACTGACGGACAC 1285
v i - i i -i v ii v - v v i v
(CAGA)n#Simpl 483 GACAGACAGACAGACA-GACAGACAGACAGACAGACAGACAGACAGACAG 531
etv6flanking 1286 ACA-AC-GACAGA 1296
- -
(CAGA)n#Simpl 532 ACAGACAGACAGA 544
Matrix = Unknown
Transitions / transversions = 0.45 (35/78)
Gap_init rate = 0.08 (44 / 537), avg. gap size = 1.00 (44 / 44)
+ 26 0.0 0.0 0.0 etv6flanking 1320 1344 (60918) + (G)n Simple_repeat 1 25 (0) 4
ANNOTATION EVIDENCE:
26 0.00 0.00 0.00 etv6flanking 1320 1344 60918 + (G)n Simple_repeat 1 25 0
26 0.00 0.00 0.00 etv6flanking 1320 1344 (60918) (G)n#Simple_repeat 1 25 (0) c_b1s251i1
etv6flanking 1320 GGGGGGGGGGGGGGGGGGGGGGGGG 1344
(G)n#Simple_r 1 GGGGGGGGGGGGGGGGGGGGGGGGG 25
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 24), avg. gap size = 0.0 (0 / 0)
+ 27 9.5 0.0 2.2 etv6flanking 1481 1527 (60735) + (AATAAA)n Simple_repeat 1 46 (0) 5
ANNOTATION EVIDENCE:
27 9.46 0.00 2.17 etv6flanking 1481 1527 60735 + (AATAAA)n Simple_repeat 1 46 0
27 9.46 0.00 2.17 etv6flanking 1481 1527 (60735) (AATAAA)n#Simple_repeat 1 46 (0) m_b1s252i3
etv6flanking 1481 AATAATAAATAAAAATAAAAATAAAAATAAATAAAAAAACATAAATA 1527
- v v i v
(AATAAA)n#Sim 1 AATAA-AAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATA 46
Matrix = Unknown
Transitions / transversions = 0.33 (1/3)
Gap_init rate = 0.02 (1 / 46), avg. gap size = 1.00 (1 / 1)
+ 19 4.5 0.0 0.0 etv6flanking 1579 1601 (60661) + (G)n Simple_repeat 1 23 (0) 6
ANNOTATION EVIDENCE:
19 4.55 0.00 0.00 etv6flanking 1579 1601 60661 + (G)n Simple_repeat 1 23 0
19 4.55 0.00 0.00 etv6flanking 1579 1601 (60661) (G)n#Simple_repeat 1 23 (0) m_b1s252i4
etv6flanking 1579 GGAGGGGGGGGGGGGGGGGGGGG 1601
i
(G)n#Simple_r 1 GGGGGGGGGGGGGGGGGGGGGGG 23
Matrix = Unknown
Transitions / transversions = 1.00 (1/0)
Gap_init rate = 0.00 (0 / 22), avg. gap size = 0.0 (0 / 0)
+ 46 0.0 0.0 0.0 etv6flanking 1794 1832 (60430) + (TA)n Simple_repeat 1 39 (0) 7
ANNOTATION EVIDENCE:
46 0.00 0.00 0.00 etv6flanking 1794 1832 60430 + (TA)n Simple_repeat 1 39 0
46 0.00 0.00 0.00 etv6flanking 1794 1832 (60430) (TA)n#Simple_repeat 1 39 (0) c_b1s251i2
etv6flanking 1794 TATATATATATATATATATATATATATATATATATATAT 1832
(TA)n#Simple_ 1 TATATATATATATATATATATATATATATATATATATAT 39
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 38), avg. gap size = 0.0 (0 / 0)
+ 3013 32.7 1.8 1.6 etv6flanking 2417 4065 (58197) + I-5_DR LINE/I 2541 4192 (580) 8
ANNOTATION EVIDENCE:
3013 32.73 1.82 1.63 etv6flanking 2417 4065 58197 + I-5_DR LINE/I 2541 4192 580
3013 32.73 1.82 1.63 etv6flanking 2417 4065 (58197) I-5_DR#LINE/I 2541 4192 (580) m_b1s001i0
etv6flanking 2417 ATGGACCCAATTATTTGTTTAGAGACAGAAATAAAAAAAGCCCAGGTAAA 2466
i v vi i i v i i
I-5_DR#LINE/I 2541 ATGGATCCTATAGTTTATTTAGAAACAGAAATTAGAAAAGCTCAGGTAAA 2590
etv6flanking 2467 TAAGGAGTCAGTGATGGCGGTGTTTTTTGATGTGGAAAAGGCATATGACA 2516
i i vi ivi i i v i i i i
I-5_DR#LINE/I 2591 CAAAGAGGTAGTATCGGCAGTATTTATTGATATAGAGAAGGCATATGATA 2640
etv6flanking 2517 TGGTTTGGAAGGAAGGGTTGATGATTAAGTTTAATA--TTATGGGAATAG 2564
v i iv iv i v i -- - i v v
I-5_DR#LINE/I 2641 TGGTATGGAAAGAAGGAGTATTGATTAAATTAAACAAATTA-GGAATTAC 2689
etv6flanking 2565 GGGTAGAGTATACAATTGGATTAAAGATGTTTTACTTGACAGAGTTATCC 2614
i v i vi i v iv i iv i i
I-5_DR#LINE/I 2690 AGGAAGAATATTTAACTGGATAAAAGACTTTTTATTTGGAAGAATTATTC 2739
etv6flanking 2615 AAGTCAGAATTGGGACAGCACTATCGAGAAGATATCCGGTGGAGAATGGT 2664
i v v v i i i i vi i v
I-5_DR#LINE/I 2740 AAGTTAGAATAGGTAAAGTATTATCAAAAAGATATGTGGTAGAGAATGGA 2789
etv6flanking 2665 ACACCTCAGGGTAGTGTAATTAGTCCAATACTGTTCTCCATCATGATAAA 2714
v v i v v i v v iv v v
I-5_DR#LINE/I 2790 ACCCCACAAGGGAGTGTAATAAGCCCAATTCTCTTTACAATAATGATAAA 2839
etv6flanking 2715 TGATGTGTTCCTTCAA-GTTCAGAGTGATATTGGACGATCCCTATTCGCA 2763
ii i i- i -i i i i v i i
I-5_DR#LINE/I 2840 TGACATATTT-TCCAATATTCAAAGTGATATCGGACGGTCACTGTTTGCA 2888
etv6flanking 2764 GATGATGGAGCGTTGTGGAAGAGGGGGAAGAACATAAATCATATTAAAGG 2813
i vi i i i ii v v i vi
I-5_DR#LINE/I 2889 GATGACGGAGCTCTGTGGAAGAGAGGAAGGAATGTTAAACATGTTAAACA 2938
etv6flanking 2814 GAAGGTACAAGAGGCCGTGAATGAAGTAGAAAGATGGTCGTATGCATGGG 2863
i i i i i vvv i iii i v
I-5_DR#LINE/I 2939 AAAGATACAAGAAGCTGTAAAGTTAGTGGAGGAATGGTCATATTCATGGG 2988
etv6flanking 2864 GATTCAAGTTTTCTGTGGGGAAAATGAAAACAATCTGCTTTACTAGTAAG 2913
v v v v ii i ii vi v vv v i
I-5_DR#LINE/I 2989 GTTTCAAGTTATCAGTTGAAAAGACAAAAACTGTATTATTTACTAGGAAA 3038
etv6flanking 2914 AGAGGAGTGGTTACTCAGCTA--AAGCTGTATGGGCAATTCATTGATCAA 2961
i -- viv iv vi vv -- vv i ivvvv v v i
I-5_DR#LINE/I 3039 AAA--ATCTGCGACATAGAAATTAATATGTATGGACAGAAACTGGAGCAG 3086
etv6flanking 2962 GTGAAGGTTTTTAGGTTTCCAGGTGTGTGGTTCGATGAGAAGCTAACATG 3011
i viv ii iii vi i i ivi ii v
I-5_DR#LINE/I 3087 GTAAAGTCATTTAAATTTTTGGGAATGTGGCTTGATACAAAATTAACTTG 3136
etv6flanking 3012 GAATGAGCAGATTCAGATGATAGTTAGGAAATGTAAAAATATTTTAAATG 3061
i v v vvv v iv i vi v i
I-5_DR#LINE/I 3137 GAATGAACATATTAACCAGCTAGTTAACAAATGCAAAAAAGTATTAAATA 3186
etv6flanking 3062 TG-TGAGGTGTCTAACAGGGTCGGAATGGGGAGCCAGCAGTTCTGCAATG 3110
i- i iv v iv v v i vvv iv i
I-5_DR#LINE/I 3187 TAATGAGATGTCTGTCTGGAACTGAATGGGGAGCGAGTAGAAATGCGTTA 3236
etv6flanking 3111 AAGAATATTGATATTGCGCTGATGATATCAGTTTTTGATTATGGGTGTAT 3160
ii i vv i v ii i vvv v v i v
I-5_DR#LINE/I 3237 AGAAACATATATGTAGCATTGGTTCGATCAGTATTAGACTATGGGTGTTT 3286
etv6flanking 3161 AGCGTTTGGAACGGCGGCGAAAAC--GTCACTAAAAAAGTTGGAAGTGGT 3208
viii v vi vv v iv --i vvi -- i vi
I-5_DR#LINE/I 3287 CATATATGGAAGAGCTTCTAAGTCTAATCTGCAAAAAA--TAGAAGTTAT 3334
etv6flanking 3209 GCAATCTCAGGCTATGAGACTTTGTTGTGGGGCTTTGAGAACAAGTCCTG 3258
i v i vv i v v i vv i v v vi
I-5_DR#LINE/I 3335 ACAAGCCCAGGCATTAAGAATATGTTGTGGAGCTTATAAAACTACTCCAA 3384
etv6flanking 3259 TTTCTGCTCTCCAGGTGGAGGTGGGTGAGATGCCGCTGCATTTGAGACGT 3308
i v v i v i ii v i i i v vi i v v
I-5_DR#LINE/I 3385 TCTCAGCACTTCATGTAGAAATGGGAGAAATACCACTGGAGCTAAGAAGG 3434
etv6flanking 3309 AAACAATTAATGTTGAGCTATTGGGCCAATCTGCAGGGGCATTCCGTGGA 3358
v v ii iiv i i vvvvi ii
I-5_DR#LINE/I 3435 AAACAAATAATGATGAATTATTGGATAAATCTACAAGGGCAGGAAATAAA 3484
etv6flanking 3359 CAAGCACCCAACCA------TGCTCATGCCATGTTGGGAAAGAGAAAGGG 3402
i ivv i i v ------ v i v v v viv iii
I-5_DR#LINE/I 3485 TAGTAATCCAGCAAAAAGAGTTCTTATTCCAAGATGGGAATATGAAAAAA 3534
etv6flanking 3403 ACAAACGGGGCTGCTTTGCGTGGAG-TAG--TGGACAATTTGCAAGGGAG 3449
vvvvv vi - vi - -- -- v v v ii
I-5_DR#LINE/I 3535 ACAAAACTCTCTTTTTTG-GAAGAGATAGCATGG--AAGTAGCTAAAGAG 3581
etv6flanking 3450 ATGGGGT---TTGATCAGATAAGATTCACTACTACCGTGTTGCTATCGGT 3496
ii --- v --- i v i vi vv v iiiiv v iii
I-5_DR#LINE/I 3582 ATGGAATTAATTGATAA---AGGCTTTAACAAAACAGTACCAATAGCAAC 3628
etv6flanking 3497 AACACCTCCTTGGTTATTTTCCTCAGTATTAGTTGATACATTTTTTCTCA 3546
v v v i i i v ---- vvv? i
I-5_DR#LINE/I 3629 AACACCACCATGGTTATATCCTTTAGGATTAGTTG----ATTTGGANTTA 3674
etv6flanking 3547 CTCTGAAAAAAATCCAAGCACT-TAAAAACATGGATTATATTGCAGGAAT 3595
-- iv v v i - - i v v v vv v
I-5_DR#LINE/I 3675 --CTGAGCAATAGCCAGG-ACTATAGAAACATCGCTAATATGTCTGGAAT 3721
etv6flanking 3596 GGTGGAGGATAGGTTAAAGACGACATATAAATCATTTACTCCGGCATACA 3645
ii v i iiv v v i v vv v vvi i
I-5_DR#LINE/I 3722 AATTGAAGATAAAATTATGACAAAATATAAAGAATATACTGAAGTATACA 3771
etv6flanking 3646 CGGATGGATCAA-AGATCCTAGTACAGGTAGAACCGGTTTTGCGGTCACC 3694
i i i- i iivii v i i v v vv vvii
I-5_DR#LINE/I 3772 CAGATGGGTCAGTAAATTTGGATTCGGGCAGAACAGGGTTTGGTGTATTT 3821
etv6flanking 3695 ATCCCATCTTTTAGT-TATGAAGTGAAATGGAGATCGTCAGACCATCTGT 3743
i v vvv viii- v v i i -ii v iv i ii i iv
I-5_DR#LINE/I 3822 GTACCAAAATTAGACATATCAATTAAGA-AAAGAACAACAAATTACCTAA 3870
etv6flanking 3744 CGGTGTATACAGTCGAGACATTAGCCATTTTAGCAGCACTACAGTGGGTG 3793
ii i v iviiv i i vv v v i vi v iii
I-5_DR#LINE/I 3871 CAATATATACAGTAGAACTGATGGCTATAATTGCTGCGCTTTATTGGACA 3920
etv6flanking 3794 GAGGAGGTTCAAATAAGTAAGGTCATCATTTGTTCGGATTCCAGTTTATC 3843
iiv vi v iv i vi i v i v i v
I-5_DR#LINE/I 3921 GAGGAAAGTGGATTAAAGAAAGTAGTTATATGTTCAGATTCCTGTTCAGC 3970
etv6flanking 3844 ATTAGTGTCATTACAATCACTCACATCTCACAGCAGGCAGGACTTAATCC 3893
ivv v vv i v v vv v i i i vv vi
I-5_DR#LINE/I 3971 ATTAAGTTCAATCAAGTCAATGACATCAAAGAACAGACAGGATTGCATAT 4020
etv6flanking 3894 ATGAAAAACAAGAAGCACTTTTCCGTTTTAA--TCATAGGG---GTATTT 3938
v i v -- i ---i vi -- v i ---i v
I-5_DR#LINE/I 4021 ATGAAATATATGAA--ATTTT---ATTTAGACTTCAGAGAGCAAATATTA 4065
etv6flanking 3939 TGGTAGCATTCATGTGGGTGCCGGCACATAGAGGGGCAAAGGGAAACGAA 3988
vii i i i v i v iiiv i i
I-5_DR#LINE/I 4066 GAATAGTATTTATGTGGATTCCAGCACATATAGGAATTAAAGGAAATGAA 4115
etv6flanking 3989 GCAGCAGACAAACTAGCAAAGCAGGCATTGGAATGTCAGAACAAG--AAG 4036
i ivvvi v iv i - v -iii vv i-- v
I-5_DR#LINE/I 4116 ACAGCAGATTTTTTAGCTAAAGAAGCA-TGCAA-ACTAGACGAAATTATG 4163
etv6flanking 4037 GACATTTTATTTAGCAAAGCAGAAGCTAA 4065
i i i i v i i v
I-5_DR#LINE/I 4164 AATATCTTGTTAAGTAAAACAGAAGCAAA 4192
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 43.18
Transitions / transversions = 1.12 (280/251)
Gap_init rate = 0.03 (42 / 1648), avg. gap size = 1.36 (57 / 42)
+ 42 0.0 0.0 0.0 etv6flanking 4113 4148 (58114) + (TA)n Simple_repeat 1 36 (0) 9
ANNOTATION EVIDENCE:
42 0.00 0.00 0.00 etv6flanking 4113 4148 58114 + (TA)n Simple_repeat 1 36 0
42 0.00 0.00 0.00 etv6flanking 4113 4148 (58114) (TA)n#Simple_repeat 1 36 (0) c_b1s251i3
etv6flanking 4113 TATATATATATATATATATATATATATATATATATA 4148
(TA)n#Simple_ 1 TATATATATATATATATATATATATATATATATATA 36
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 35), avg. gap size = 0.0 (0 / 0)
+ 235 12.9 1.6 1.6 etv6flanking 4168 4230 (58032) C Helitron-4_DR RC/Helitron (18412) 13456 13394 10
ANNOTATION EVIDENCE:
235 12.91 1.59 1.59 etv6flanking 4168 4230 58032 C Helitron-4_DR RC/Helitron 13394 13456 18412
235 12.91 1.59 1.59 etv6flanking 4168 4230 (58032) C Helitron-4_DR#RC/Helitron (18412) 13456 13394 m_b1s001i1
etv6flanking 4168 TATTTACATCTACATATATGT-TGTGTATATGCTGTGTATATATATACAT 4216
v i v i i - i - i
C Helitron-4_DR 13456 TATATATATATATATATATATATGTGTGTATG-TGTGTATATATATATAT 13408
etv6flanking 4217 ATATATTTTATTTT 4230
v
C Helitron-4_DR 13407 ATATATTTAATTTT 13394
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 14.31
Transitions / transversions = 1.67 (5/3)
Gap_init rate = 0.03 (2 / 62), avg. gap size = 1.00 (2 / 2)
+ 18 34.4 1.9 1.9 etv6flanking 4235 4340 (57922) + (TATTTTA)n Simple_repeat 1 106 (0) 11
ANNOTATION EVIDENCE:
18 34.35 1.89 1.89 etv6flanking 4235 4340 57922 + (TATTTTA)n Simple_repeat 1 106 0
18 34.35 1.89 1.89 etv6flanking 4235 4340 (57922) (TATTTTA)n#Simple_repeat 1 106 (0) m_b1s252i5
etv6flanking 4235 TATTTTGTATTTTATATTTCACTTTGCACACTTTACTTTATGCACTGT-C 4283
i i iv vi i i iv v ii i v -i
(TATTTTA)n#Si 1 TATTTTATATTTTATATTTTATATTTTATATTTTATATTTTATATTTTAT 50
etv6flanking 4284 ACTTTCTTTCTTTCTTTCTTATA-CTTATATTATATATTTTATTGTGTTT 4332
i v v - v v i -i v vv v v
(TATTTTA)n#Si 51 ATTTTATAT-TTTATATTTTATATTTTATATTTTATATTTTATATTTTAT 99
etv6flanking 4333 AGTTTTAT 4340
-
(TATTTTA)n#Si 100 A-TTTTAT 106
Matrix = Unknown
Transitions / transversions = 1.00 (14/14)
Gap_init rate = 0.04 (4 / 105), avg. gap size = 1.00 (4 / 4)
+ 12 8.9 4.2 0.0 etv6flanking 4393 4416 (57846) + (TTCA)n Simple_repeat 1 25 (0) 12
ANNOTATION EVIDENCE:
12 8.91 4.17 0.00 etv6flanking 4393 4416 57846 + (TTCA)n Simple_repeat 1 25 0
12 8.91 4.17 0.00 etv6flanking 4393 4416 (57846) (TTCA)n#Simple_repeat 1 25 (0) m_b1s252i6
etv6flanking 4393 TTCATTCA-TATTTCATTCATTCAT 4416
- vv
(TTCA)n#Simpl 1 TTCATTCATTCATTCATTCATTCAT 25
Matrix = Unknown
Transitions / transversions = 0.00 (0/2)
Gap_init rate = 0.04 (1 / 23), avg. gap size = 1.00 (1 / 1)
+ 327 34.4 5.0 5.6 etv6flanking 4448 5001 (57261) + I-5_DR LINE/I 4222 4772 (0) 8
ANNOTATION EVIDENCE:
327 34.43 5.05 5.63 etv6flanking 4448 5001 57261 + I-5_DR LINE/I 4222 4772 0
327 34.43 5.05 5.63 etv6flanking 4448 5001 (57261) I-5_DR#LINE/I 4222 4772 (0) m_b1s001i2
etv6flanking 4448 AATGGCAGCACAGTTGGGAGGCAGGAGGCA-CAGGAAGACAT--CTGTAC 4494
i i i i vi-i vii - i v -- i -
I-5_DR#LINE/I 4222 AGTGGCAGTATAATTGGGATA-GGGATATAACGGGTAGACATTACTATA- 4269
etv6flanking 4495 ATGATT-CAGAAGGAGGTTAACAAGGGGAGGACAACAACATTCAGCACCA 4543
-- - ii i i viiv vv v ivv v vvv ii vi
I-5_DR#LINE/I 4270 --GATTACAAGAGAAAGTAGGAAATTGGAGGAAAGGTAAAGGAAATAATA 4317
etv6flanking 4544 GAAAAGAAAACATATTAACTAGACTCAGGATTGGCCATACAAAACTAAAC 4593
i v iiv v vv ii v ii v v i iivi i
I-5_DR#LINE/I 4318 AAATAGAAGGAATAATAACACGGTTAAAAATGGGACACACAGGCTTAAAT 4367
etv6flanking 4594 AAAACAATGCAATTAATTAAAAAACACCCAACCGGACTGTGTGAGTACTG 4643
v i v vii i i i vv i
I-5_DR#LINE/I 4368 AAAACATTACATTTAATAGGAAAACATCCAACTGGATTGTGTGATAATTG 4417
etv6flanking 4644 CAAGACAGCAGAAACGATGGAGCATGTCATAGAGCAATGCCAGAAAT--G 4691
iv ivi vi v ii v i iv vivi v v --i
I-5_DR#LINE/I 4418 TCAGGAGGAGGAATCAGTCGAACATGTTTTATGTTACTGCAAGAAATTCA 4467
etv6flanking 4692 TAGGAACAAGCAGGCAGGTTGAAGAGGAGGCTGGCAATAGGAGGGTT--- 4738
iv iv - iv vi i iiiiiv vii v vi iiv ---
I-5_DR#LINE/I 4468 TAATAGAAAG-AGAAATATTAAAGAAAGAAATTATAAAACAAAACTTTTC 4516
etv6flanking 4739 -GCAATTGAGGGATGCATTGTCCTTGGGGGCA--------GGAAGGGTAC 4779
- v iiiv v viv i v i i-------- i vv v
I-5_DR#LINE/I 4517 AGAAATCAGCGTAAAAATTATACTTGGAGGCGATAACAATGAAAGTTTAG 4566
etv6flanking 4780 TGCAGTATTTGAAGAAGACAGGGTTATATAAAATAATTTAGGGAAATGAA 4829
v i i i i i i vv v vi iiii i
I-5_DR#LINE/I 4567 TGAAATATCTAAGGAAAACAGGATTAATTAACAGGATTTAAAAGAATAAA 4616
etv6flanking 4830 GGTG-------ACAGGGCTCCCTTCTTAGTTTATTTTATTTTTGTTTTAT 4872
i ------- ? ????????? v i ------- v --
I-5_DR#LINE/I 4617 GATGTAGGTAAANANNNNNNNNNTGTTAAT-------ATTTTTTTTTT-- 4657
etv6flanking 4873 TTTAATTTTCTTTTCTTTTTGAGTGGATAAAAGTTTCTAGATATTTATAG 4922
------ i i ii i v - iv ivi - ii-- i i v
I-5_DR#LINE/I 4658 ------TTTTTTTTCTCTCCGGGAGG-TAGCAAACTC-AGGC--TCACAC 4697
etv6flanking 4923 TTACCAAAGAAAGACAGTAGGGGGCGGTAATGCACC--AGTTTGGATTCC 4970
-- i-----v v -- iv v v
I-5_DR#LINE/I 4698 T--CCAG-----TACAGTAGGTGGCGGTAATGCACCAAAAGTTGGTTGCC 4740
etv6flanking 4971 AGCCGCCTAAAAACAA-AAAGAAGAAAAAGAA 5001
ii vv i- i
I-5_DR#LINE/I 4741 GACCGCCATAAAACAGCAAAGAAGAAGAAGAA 4772
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 47.64
Transitions / transversions = 1.40 (105/75)
Gap_init rate = 0.07 (41 / 553), avg. gap size = 1.44 (59 / 41)
+ 12 5.5 0.0 0.0 etv6flanking 6657 6675 (55587) + (TGT)n Simple_repeat 1 19 (0) 13
ANNOTATION EVIDENCE:
12 5.48 0.00 0.00 etv6flanking 6657 6675 55587 + (TGT)n Simple_repeat 1 19 0
12 5.48 0.00 0.00 etv6flanking 6657 6675 (55587) (TGT)n#Simple_repeat 1 19 (0) m_b1s252i7
etv6flanking 6657 TGTTGTTGTTGGTGTTGTT 6675
v
(TGT)n#Simple 1 TGTTGTTGTTGTTGTTGTT 19
Matrix = Unknown
Transitions / transversions = 0.00 (0/1)
Gap_init rate = 0.00 (0 / 18), avg. gap size = 0.0 (0 / 0)
+ 12 9.1 4.2 0.0 etv6flanking 7218 7241 (55021) + (AATA)n Simple_repeat 1 25 (0) 14
ANNOTATION EVIDENCE:
12 9.12 4.17 0.00 etv6flanking 7218 7241 55021 + (AATA)n Simple_repeat 1 25 0
12 9.12 4.17 0.00 etv6flanking 7218 7241 (55021) (AATA)n#Simple_repeat 1 25 (0) m_b1s252i8
etv6flanking 7218 AATAAA-AAGTGAATAAATAAATAA 7241
- i i
(AATA)n#Simpl 1 AATAAATAAATAAATAAATAAATAA 25
Matrix = Unknown
Transitions / transversions = 1.00 (2/0)
Gap_init rate = 0.04 (1 / 23), avg. gap size = 1.00 (1 / 1)
+ 1822 7.6 1.9 3.4 etv6flanking 7292 7561 (54701) + DNA-2-34_DR DNA/TcMar-ISRm11 607 873 (349) 15
ANNOTATION EVIDENCE:
1822 7.64 1.85 3.37 etv6flanking 7292 7562 54700 + DNA-2-34_DR DNA/TcMar-ISRm11 607 873 349
1822 7.64 1.85 3.37 etv6flanking 7292 7562 (54700) DNA-2-34_DR#DNA/TcMar-ISRm11 607 873 (349) m_b1s001i3
etv6flanking 7292 TGTTTTTTTGCTCAGAATGCTATTGTGTGTTTCTTGGATATTTTGTTCAC 7341
?i v v
DNA-2-34_DR#D 607 TGTTTTTTTNTTCAGAATGCTCTTGTGTGTTTCATGGATATTTTGTTCAC 656
etv6flanking 7342 TGTAAGCAATACTGTAAAACCTTTTCTGTTCCATCAGACTGTAAACAGTA 7391
i i v i------- i
DNA-2-34_DR#D 657 TGTAAGCAATACTGTAAAACTTTTTCTGTTCTATCATACC-------GTG 699
etv6flanking 7392 TTTCTACTGTACCTCCTGTAGTAAACAGTAAAGGAGAAAAAAAACTGTTT 7441
i - i
DNA-2-34_DR#D 700 TTTCTACTGTACCTCCTGTAGTAAACAGTAAAGGAAAAAAAAAA-TATTT 748
etv6flanking 7442 AGTTTTTTACTGGAATGCTTTTGAATGTGAACAT-----TACATGTGGGC 7486
- i ----- i
DNA-2-34_DR#D 749 -GCTTTTTACTGGAATGCTTTTGAATGTGAACATTACTGTACATGTGGAC 797
etv6flanking 7487 ATACAGTTCCCAACCAAGACATGAAGTGTAAAAACAGTGGACTACATGTT 7536
v vv v i i i
DNA-2-34_DR#D 798 ATACAGTTCCCAACCAAGAAATTTAGTGTCAAAACGGTGGATTGCATGTT 847
etv6flanking 7537 TTGCATACAAATACCTGTAAAACTGA 7562
i
DNA-2-34_DR#D 848 TTGCATGCAAATACCTGTAAAACTGA 873
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 7.35
Transitions / transversions = 1.86 (13/7)
Gap_init rate = 0.04 (10 / 270), avg. gap size = 1.40 (14 / 10)
+ 30 5.5 0.0 0.0 etv6flanking 7563 7600 (54662) + (AAGGC)n Simple_repeat 1 38 (0) 16
ANNOTATION EVIDENCE:
30 5.48 0.00 0.00 etv6flanking 7563 7600 54662 + (AAGGC)n Simple_repeat 1 38 0
30 5.48 0.00 0.00 etv6flanking 7563 7600 (54662) (AAGGC)n#Simple_repeat 1 38 (0) c_b1s251i4
etv6flanking 7563 AAGGCAAGGCAAGGCAAGGCTAGGAAAGGCAAGGCAAG 7600
v v
(AAGGC)n#Simp 1 AAGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAG 38
Matrix = Unknown
Transitions / transversions = 0.00 (0/2)
Gap_init rate = 0.00 (0 / 37), avg. gap size = 0.0 (0 / 0)
+ 1387 28.4 7.8 2.7 etv6flanking 7601 8372 (53890) C L2-3_DRe LINE/L2 (19) 5049 4240 17
ANNOTATION EVIDENCE:
1387 28.42 7.75 2.71 etv6flanking 7601 8372 53890 C L2-3_DRe LINE/L2 4240 5049 19
1387 28.42 7.75 2.71 etv6flanking 7601 8372 (53890) C L2-3_DRe#LINE/L2 (19) 5049 4240 m_b1s001i4
etv6flanking 7601 TTTATTTGTATAGCACATTTCA-ACAACAA-GGCGATTCAAAGTGCTTCA 7648
i - - i- i i
C L2-3_DRe#LINE 5049 TTTATTTATATAGCACATTTCATACA-CAGTGGCAATTCAAAGTGCTTTA 5001
etv6flanking 7649 CATAAA--------------ACCATTA---------AAAAC----ATCA- 7670
-------------- v v --------- ---- v -
C L2-3_DRe#LINE 5000 CATAAACAGGAATAAAAGAGACAAGTATAAGAAAATAAAACGCAAATAAT 4951
etv6flanking 7671 AAACATATTTAAAAACAGTTAAGAAAACATTAAAAC-AGTCAAAAAG--- 7716
v iv v i v v i-? i v ---
C L2-3_DRe#LINE 4950 AAAAATGATTAAAAACAGATAAAAACAGATTAAAATGNGTTAAAACGGGT 4901
etv6flanking 7717 CAAAAATAAATAAAAATGGAA--TAAAAG--TTGCAGTGCAGT-TGAAGA 7761
i v vi i v i --v i-- vii ii - ----
C L2-3_DRe#LINE 4900 TATAAAAGAATGAAAAAGAAAACGAAAAACATAATAGTGCGATCTG---- 4855
etv6flanking 7762 AATAAAATGCAGTA--GTGAGAAATCAGTTAAAGGCAGCAGC-ATACAGA 7808
-- vii i i -- vvv v - - - v
C L2-3_DRe#LINE 4854 --TCGGACGCAGCACAGTGCTCATTCAGT-AAAGGCA-CAGCTAAACAGA 4809
etv6flanking 7809 AAAGTCTTCAAGCTGGATTTAAAGGAGCTGAGGGTCTCAACAGACCTG-- 7856
viv i iv v i v v iv iv ivv i v i --
C L2-3_DRe#LINE 4808 TGTGTTTTCAGTCTTGATTTGAATGTGCCTAATGTTGGAGCACATCTGAT 4759
etv6flanking 7857 CAGCTTTCAGGAACATTGTTGCA-CATATGTGGAGCAG----AAAAGCTG 7901
-- v vv vi v - -ii v i i?---- ivi
C L2-3_DRe#LINE 4758 CA--TTTCTGGAAGCTGATTCCAGCA-GCGAGGGGCGNCGNTAGTGGCTG 4712
etv6flanking 7902 AACGCTGCTTCTCCATGTTTAGTTCTGA-CTCTAGGAAC----AGAAAGT 7946
v i v v v i v v- - v ---- vvvi
C L2-3_DRe#LINE 4711 AAGGCCGATTCACCCTGCTTTGA-CTGAACTCTTGGAACTTCTAGTTTAT 4663
etv6flanking 7947 AGGGCCGTCCCAGACGACCTGAGGGGCCGAGATGGTTCATA--AGGTAGC 7994
v i--- i i - i v ii vivvv ii --vi i--
C L2-3_DRe#LINE 4662 ATGA---TCCTAAA-GATCTGAGTGATCTGTTAGGTTTGTATTCAGTG-- 4619
etv6flanking 7995 AGCAGATCACACATGTATTTAGGCCCTAAACCATTCAGTGCTTTATAAAC 8044
v vvvv v i ii i v i
C L2-3_DRe#LINE 4618 AGCATATCTGTAATGTATTGAGGTCCTAGGCCATTTAGTGATTTATAGAC 4569
etv6flanking 8045 CAGCAGCAGGATCTTAAAGTCAATTCTT--TGTTGGACAGGAAGCCAGTG 8092
i ii iv ii i v v-- --i v i
C L2-3_DRe#LINE 4568 CAGTAATAATACTTTAAAATCTATTCTGAATGT--AACTGGGAGCCAGTG 4521
etv6flanking 8093 CAAAGACCTCAGAACTGGAGTGATGAGATCCACTTTCCTGGTCTTAGTTA 8142
i v i v v v v iiv i ii i i
C L2-3_DRe#LINE 4520 TAAAGACCTGAGGACAGGTGTGATGTGCTCTGATTTTCTGGTTCTGGTCA 4471
etv6flanking 8143 GGACACGAGCTGCAGCGTTCTGTATCAGCTGCAGCTTTCTGACGGACTTT 8192
i iv vi i v v i v v v
C L2-3_DRe#LINE 4470 GAATCCTGGCCGCAGCGTTCTGGATGAGCTGCAACTGTCTGACTGTCTTT 4421
etv6flanking 8193 TTACAGAGGCCTGTGAACACACCGTTACAGTAGTCAAGTCTACTGAAGAT 8242
ivii v iv vv i v vi i vv
C L2-3_DRe#LINE 4420 TTGGGAAGGCCAGTGAGGAGTCCGTTACAGTAATCCACCCTGCTGCTGAT 4371
etv6flanking 8243 AAATGCATGGAC-GGTTTTTCCAAATCCT-GTTGAGACATAAGTCCTCTA 8290
v i -i i i i i -ii - v i iv v i
C L2-3_DRe#LINE 4370 AAAAGCATGAACAAGTTTCTCTAAGTCTTCACTG-GAAACAAAGCATCTG 4322
etv6flanking 8291 ACCCTTGATATATTCTTCAGGTGATAGTAGGCTGATTTTGTAATTGTCTT 8340
ii vv i i v i v vv i i ii
C L2-3_DRe#LINE 4321 ATTCTTGCAATGTTTTTGAGATGATAGTATGCTGATTTACTGACTGCTTT 4272
etv6flanking 8341 GATATGGCTGTTCAGGTTGAGGTCTGAATCCA 8372
i i i v iii v i v
C L2-3_DRe#LINE 4271 GACATGACTATTGAAACTCAGATCTGACTCCA 4240
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 35.07
Transitions / transversions = 1.12 (113/101)
Gap_init rate = 0.06 (44 / 771), avg. gap size = 1.86 (82 / 44)
+ 23 9.8 0.0 0.0 etv6flanking 9010 9042 (53220) + (G)n Simple_repeat 1 33 (0) 18
ANNOTATION EVIDENCE:
23 9.78 0.00 0.00 etv6flanking 9010 9042 53220 + (G)n Simple_repeat 1 33 0
23 9.78 0.00 0.00 etv6flanking 9010 9042 (53220) (G)n#Simple_repeat 1 33 (0) m_b1s252i9
etv6flanking 9010 GGAGGGGGAGGGGGGGGGGGTGGGGGGGGGGGG 9042
i i v
(G)n#Simple_r 1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 33
Matrix = Unknown
Transitions / transversions = 2.00 (2/1)
Gap_init rate = 0.00 (0 / 32), avg. gap size = 0.0 (0 / 0)
+ 1506 28.8 1.8 1.8 etv6flanking 9246 9750 (52512) C L2-3_DRe LINE/L2 (835) 4233 3729 17
ANNOTATION EVIDENCE:
1506 28.83 1.78 1.78 etv6flanking 9246 9750 52512 C L2-3_DRe LINE/L2 3729 4233 835
1506 28.83 1.78 1.78 etv6flanking 9246 9750 (52512) C L2-3_DRe#LINE/L2 (835) 4233 3729 m_b1s001i5
etv6flanking 9246 ACACCTAGATTTTTGGCTTGGTTT---GAGGTTTATAACATCAGTGTTTG 9292
v i i i vi --- vv i- v v i ? ii--
C L2-3_DRe#LINE 4233 ACACCAAGATTCTTGACCTTATTTTTTGTCGTTTG-ACCTTTAGNGCC-- 4187
etv6flanking 9293 AAGCTGAGCGCTCACTTTCAATCGTTCATCCTTGGGACCAAAAACAATGA 9342
v iv ii i v ivvvi ii vvv vi
C L2-3_DRe#LINE 4186 AAGGTACGCATTCACCTTGAGAACCTCATCTCTGTTCCCAAACGCAATGA 4137
etv6flanking 9343 CTTCTGTTCTATCTTTATTTAATTGAAGAACATTCTGGCACATCCAGATG 9392
v i v i i vi i iv
C L2-3_DRe#LINE 4136 CTTCAGTTTTCTCTTTGTTTAACTGAAGAAAGTTTTGGCACATCCAATTG 4087
etv6flanking 9393 TTGATTTCTTCAATGCATTTAGCCAGCCCTTGT--ATGGGATTATAGTCC 9440
? v -- v vvvv -- ii i v
C L2-3_DRe#LINE 4086 TTNATTTCATCAATGCATT--GGCAGAGGGTGTCAATGGGGCTGTAGTCA 4039
etv6flanking 9441 CCTGGTGATATAGTTATGTAGATTTGTGTGTCGTCTGCATAATTATGATA 9490
iiv iii vi i v i v i v ii i i
C L2-3_DRe#LINE 4038 TTAGGCAGTAAGGCTAGGTAGATCTGAGTGTCATCAGCATAGCTGTGGTA 3989
etv6flanking 9491 ACACACTTTGTTGTTTTTCATAATCTGAGCCTGTGGAAGCATGTAGATGT 9540
iv v i v v i v i ivi v v i i v
C L2-3_DRe#LINE 3988 GGAGATTTGGTTCTTTCTCATTATTTGGCTCAGAGGGAGCATGTAAAGGT 3939
etv6flanking 9541 TGAACCGAAGAGGCCCCAGTATTGAACCTTGGGGAACACCACATGTCATC 9590
v i iv v i i v i v i v
C L2-3_DRe#LINE 3938 TGAACAGGAGAGGTGCCAGAATCGAGCCTTGTGGGACTCCACACGTCATG 3889
etv6flanking 9591 C-TGGTCAGCTCTGATGTGTAATTAGCTA--CCGATACAAAGTAATGTCG 9637
v- vi v - iv i ii i v -- i -- vi iv v
C L2-3_DRe#LINE 3888 GGTGTCCACCTC-GACCTATGGTCACCTATACTGA--CATGGTAACCTCT 3842
etv6flanking 9638 GTCCTTCAAG-TAGGATTTAAACCAGTTAAGAGCTGCGCCAGAAAGTCCT 9686
?- - i i i v i ii i i v i v
C L2-3_DRe#LINE 3841 N-CCTTCAAGGTAAGATCTGAACCATTTGAGGACCGTGCCAGACAGCCCA 3793
etv6flanking 9687 ACCCAGACTTTCAGTCTGTCTAGTAGTATGTCATGATCGACCGTTTCGAA 9736
vi i i i i v iii v v i
C L2-3_DRe#LINE 3792 ACCCAGTTTTCCAGCCTATCCAGAAGTATGCTGTGATCGACAGTGTCAAA 3743
etv6flanking 9737 TGCAGCACTAAGAT 9750
i
C L2-3_DRe#LINE 3742 TGCAGCACTGAGAT 3729
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 36.21
Transitions / transversions = 1.31 (81/62)
Gap_init rate = 0.03 (14 / 504), avg. gap size = 1.29 (18 / 14)
+ 157 0.0 0.0 0.0 etv6flanking 10210 10342 (51920) + (AC)n Simple_repeat 1 133 (0) 19
ANNOTATION EVIDENCE:
157 0.00 0.00 0.00 etv6flanking 10210 10342 51920 + (AC)n Simple_repeat 1 133 0
157 0.00 0.00 0.00 etv6flanking 10210 10342 (51920) (AC)n#Simple_repeat 1 133 (0) c_b1s251i5
etv6flanking 10210 ACACACACACACACACACACACACACACACACACACACACACACACACAC 10259
(AC)n#Simple_ 1 ACACACACACACACACACACACACACACACACACACACACACACACACAC 50
etv6flanking 10260 ACACACACACACACACACACACACACACACACACACACACACACACACAC 10309
(AC)n#Simple_ 51 ACACACACACACACACACACACACACACACACACACACACACACACACAC 100
etv6flanking 10310 ACACACACACACACACACACACACACACACACA 10342
(AC)n#Simple_ 101 ACACACACACACACACACACACACACACACACA 133
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 132), avg. gap size = 0.0 (0 / 0)
+ 342 23.3 6.7 0.7 etv6flanking 10411 10544 (51718) + Academ-N1_DRe DNA/Academ-1 1570 1711 (2317) 20
ANNOTATION EVIDENCE:
342 23.29 6.72 0.70 etv6flanking 10411 10544 51718 + Academ-N1_DRe DNA/Academ-1 1570 1711 2317
342 23.29 6.72 0.70 etv6flanking 10411 10544 (51718) Academ-N1_DRe#DNA/Academ-1 1570 1711 (2317) m_b1s001i6
etv6flanking 10411 TTTTTATTTTGTTCAGGCCAATTGCAGAAAGCTGCCAAGTTGAAGGATGA 10460
i i v v i i vv ?v ii v i v
Academ-N1_DRe 1570 TTTCTGTTTTTTACAGGTCAGTTGCTTAAAGNAGCTGAGATAAAGGAAGA 1619
etv6flanking 10461 TCAAAGTATTCTTTTGCATATAAAAGACAAAGCCTGT--GTGGCTCTGGA 10508
i vv i v v v ? i--???? v v ?v
Academ-N1_DRe 1620 CCCTAGCATTCTTGTGCATATTAAAGACAAAGACNGCCGNNNNCGCGGNC 1669
etv6flanking 10509 GGTGCA----GTACC--ACAAAGGCTATTATAATCAG-TACAC 10544
i ---- v i-- ? i iv - -
Academ-N1_DRe 1670 AGTGCATCAGGTTCTTGACAAAGNCTACTGGAA-CAGTTACAC 1711
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 30.25
Transitions / transversions = 0.82 (14/17)
Gap_init rate = 0.04 (5 / 133), avg. gap size = 2.00 (10 / 5)
+ 273 15.0 0.0 18.8 etv6flanking 10590 10671 (51591) C L2-4_DRe LINE/L2 (0) 3607 3539 21
ANNOTATION EVIDENCE:
273 15.03 0.00 18.84 etv6flanking 10590 10671 51591 C L2-4_DRe LINE/L2 3539 3607 0
273 15.03 0.00 18.84 etv6flanking 10590 10671 (51591) C L2-4_DRe#LINE/L2 (0) 3607 3539 m_b1s001i7
etv6flanking 10590 TAATAATAATAATAACCATTTATTTATTTATTTTATTTTATTTTTATATA 10639
------------- v i v v i
C L2-4_DRe#LINE 3607 TAATAATAATAATAA-------------TAATTCATTTTATTTGTAAATG 3571
etv6flanking 10640 GCGCTTTTCTAGATACTCAAAGTCGCTTTACA 10671
i i i i i
C L2-4_DRe#LINE 3570 GCGCCTTTCTAGACACCCAAGGTCGCCTTACA 3539
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 16.42
Transitions / transversions = 2.33 (7/3)
Gap_init rate = 0.16 (13 / 81), avg. gap size = 1.00 (13 / 13)
+ 269 23.7 1.7 0.0 etv6flanking 10849 10907 (51355) + Academ-N1_DRe DNA/Academ-1 2039 2098 (1930) 22
ANNOTATION EVIDENCE:
269 23.73 1.69 0.00 etv6flanking 10849 10907 51355 + Academ-N1_DRe DNA/Academ-1 2039 2098 1930
269 23.73 1.69 0.00 etv6flanking 10849 10907 (51355) Academ-N1_DRe#DNA/Academ-1 2039 2098 (1930) m_b1s001i8
etv6flanking 10849 TTAGGAATGAGCC-ACGTGTGATGTCAGCTATAAGATATTCTGTGAGAGG 10897
i - v ii i v i v v i
Academ-N1_DRe 2039 TTAGAAATGAGCCAACCTACGGTGTAAGCTACAAGATCTTCTCTGAGAGA 2088
etv6flanking 10898 ATCATTTGCC 10907
i iii
Academ-N1_DRe 2089 GTCATCCACC 2098
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 27.24
Transitions / transversions = 2.50 (10/4)
Gap_init rate = 0.02 (1 / 58), avg. gap size = 1.00 (1 / 1)
+ 332 23.6 1.2 16.7 etv6flanking 11017 11189 (51073) + Harbinger-8N2_DR DNA/PIF-Harbinger 12 161 (387) 23 *
ANNOTATION EVIDENCE:
332 23.58 1.16 16.67 etv6flanking 11017 11189 51073 + Harbinger-8N2_DR DNA/PIF-Harbinger 12 161 387
332 23.58 1.16 16.67 etv6flanking 11017 11189 (51073) Harbinger-8N2_DR#DNA/PIF-Harbinger 12 161 (387) m_b1s001i9
etv6flanking 11017 ATACTGCTGTGACTCTTAAGCCTA-GTTTATGCTTCCACGGCGCGTCGCT 11065
v i ---- i vi - iv i --- iv -
Harbinger-8N2 12 ATACTTCTGCG----TCAAGCGCACGCGTATGCTCC---GGCGCAGC-CT 53
etv6flanking 11066 CCGCGTCGTCGCAGACCCTACGCTGACCTCCGCTGACCCCACGCTGGAGC 11115
i iv v v iv i -------- ------- iv
Harbinger-8N2 54 TCGCGCGGTCGCATAGCCCTCGCCG--------TG-------GCTGACGC 88
etv6flanking 11116 CTGACGCGCGCATC-CAAAAAATCCTAACTACGCGTCATTTTGACGCGGA 11164
- i v - v- i iivvi v
Harbinger-8N2 89 C-GACGCGCACCTCTCAAAAAATG-TAACTACACGTCGCAACGACGCGTA 136
etv6flanking 11165 CCGTAAGCGCTGTGATTGGTCCGCT 11189
v i v v
Harbinger-8N2 137 GCGCAAGCTCTGTGATTGGTCGGCT 161
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 22.37
Transitions / transversions = 1.00 (17/17)
Gap_init rate = 0.16 (27 / 172), avg. gap size = 1.00 (27 / 27)
+ 342 21.0 2.4 1.2 etv6flanking 11116 11197 (51065) C Harbinger-8_DR DNA/PIF-Harbinger (82) 2251 2169 24
ANNOTATION EVIDENCE:
342 20.98 2.44 1.20 etv6flanking 11116 11197 51065 C Harbinger-8_DR DNA/PIF-Harbinger 2169 2251 82
342 20.98 2.44 1.20 etv6flanking 11116 11197 (51065) C Harbinger-8_DR#DNA/PIF-Harbinger (82) 2251 2169 m_b1s001i10
etv6flanking 11116 CTGACGCGCGCATC-CAAAAAATCCTAACTACGCGTCATTTTGACGCGGA 11164
i v - v- i iivvi v
C Harbinger-8_D 2251 CTGACGCGCACCTCTCAAAAAATG-TAACTACACGTCGCAACGACGCGTA 2203
etv6flanking 11165 CCGTAAGCGCTGTGATTGGTCCGCTCAG-AACGT 11197
v i v v ii - i
C Harbinger-8_D 2202 GCGCAAGCTCTGTGATTGGTCGGCTTGGTAGCGT 2169
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 21.69
Transitions / transversions = 1.12 (9/8)
Gap_init rate = 0.04 (3 / 81), avg. gap size = 1.00 (3 / 3)
+ 831 27.5 0.8 0.0 etv6flanking 11586 11825 (50437) + Academ-N1_DRe DNA/Academ-1 2672 2913 (1115) 25
ANNOTATION EVIDENCE:
831 27.50 0.83 0.00 etv6flanking 11586 11825 50437 + Academ-N1_DRe DNA/Academ-1 2672 2913 1115
831 27.50 0.83 0.00 etv6flanking 11586 11825 (50437) Academ-N1_DRe#DNA/Academ-1 2672 2913 (1115) m_b1s001i11
etv6flanking 11586 GGTGACACTCCTGCGTGTCATGCCCATGGCCTCCAACCTCTGAAAATTTG 11635
i v vvi v i v v v vi i
Academ-N1_DRe 2672 GATGACTCTCCTTGATGACATGTCCATGGCCACCCACGTCTGATGATTTA 2721
etv6flanking 11636 AATGTCACTGAAGCACAAACTGTTGTTCCCCTTGCGCTATACAATCTAGT 11685
i i v v v v v vi vi i vi i i
Academ-N1_DRe 2722 AATATTAGTGCAGCAAAATCTGTTGTGCCATTTGAACTGTTTAACCTAAT 2771
etv6flanking 11686 AAACTGGATTATAGGTGCCTCTGAGGAGCCAACGCTGGATCATTCTGTCG 11735
vvvv v vv i i i vi v i
Academ-N1_DRe 2772 TTCATGGATTATTGGTGCAACTGAAGAACCAACACTGGCCCATTGTGTTG 2821
etv6flanking 11736 ACATTGCTGATGACTTGCACTTGAAAGTGTTGTCTGTTTGTCAAGAC-AT 11784
i v v i v i v v ii i v -
Academ-N1_DRe 2822 ATATTCCAGATGATTTGAACCTGAAAGTGATCTCCATTTGCCACGACCAT 2871
etv6flanking 11785 TGTGTACATTGCTTCCAAGGGTC-ATAAGCAGACACCTAAGT 11825
i v iv v i i -iv i i
Academ-N1_DRe 2872 CGTTTATCTTGCATCTAAGGGCCCGGAGGCAGACACCTAAAT 2913
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 33.27
Transitions / transversions = 0.89 (31/35)
Gap_init rate = 0.01 (2 / 239), avg. gap size = 1.00 (2 / 2)
+ 12 8.1 3.6 3.6 etv6flanking 12161 12188 (50074) + (TAACA)n Simple_repeat 1 28 (0) 26
ANNOTATION EVIDENCE:
12 8.10 3.57 3.57 etv6flanking 12161 12188 50074 + (TAACA)n Simple_repeat 1 28 0
12 8.10 3.57 3.57 etv6flanking 12161 12188 (50074) (TAACA)n#Simple_repeat 1 28 (0) m_b1s252i10
etv6flanking 12161 TAA-ATGACTTAACATAAGCATAACATAA 12188
- i v -
(TAACA)n#Simp 1 TAACATAACATAACATAA-CATAACATAA 28
Matrix = Unknown
Transitions / transversions = 1.00 (1/1)
Gap_init rate = 0.07 (2 / 27), avg. gap size = 1.00 (2 / 2)
+ 240 10.0 2.4 2.4 etv6flanking 12552 12592 (49670) C Academ-N1_DRe DNA/Academ-1 (3987) 41 1 27
ANNOTATION EVIDENCE:
240 10.00 2.44 2.44 etv6flanking 12552 12592 49670 C Academ-N1_DRe DNA/Academ-1 1 41 3987
240 10.00 2.44 2.44 etv6flanking 12552 12592 (49670) C Academ-N1_DRe#DNA/Academ-1 (3987) 41 1 m_b1s001i12
etv6flanking 12552 GGAGCGGGTTGAAACAAAAACAGTG-TTCACCTTACGGCCTA 12592
i iv i - -
C Academ-N1_DRe 41 GGAACGGAATGAAACGAAAAC-GTGCTTCACCTTACGGCCTA 1
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 8.25
Transitions / transversions = 3.00 (3/1)
Gap_init rate = 0.05 (2 / 40), avg. gap size = 1.00 (2 / 2)
+ 294 28.2 0.0 0.0 etv6flanking 12593 12677 (49585) C L2-3_DRe LINE/L2 (1589) 3479 3395 28
ANNOTATION EVIDENCE:
294 28.24 0.00 0.00 etv6flanking 12593 12677 49585 C L2-3_DRe LINE/L2 3395 3479 1589
294 28.24 0.00 0.00 etv6flanking 12593 12677 (49585) C L2-3_DRe#LINE/L2 (1589) 3479 3395 m_b1s001i13
etv6flanking 12593 TTAGGAGTAGTTTCATAACTGCAGTTTTTAGGGCTTGTGGGAAGACACCT 12642
i i vi v i v v vv v i i iv
C L2-3_DRe#LINE 3479 TCAAGAGGGGTTTAACAACTGCAGTTTTAAGTGAGTTTGGAAAAATCCCT 3430
etv6flanking 12643 GAGAGAAGGGATGTGTTTACAATCTGTAAAAGATC 12677
v v ii v ii v i
C L2-3_DRe#LINE 3429 GAGAGAAGTGAAGCATTTACCACTTTTAGAAGATC 3395
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 35.84
Transitions / transversions = 1.00 (12/12)
Gap_init rate = 0.00 (0 / 84), avg. gap size = 0.0 (0 / 0)
+ 329 33.1 0.0 0.0 etv6flanking 12851 12998 (49264) C L2-3_DRe LINE/L2 (1967) 3101 2954 28
ANNOTATION EVIDENCE:
329 33.11 0.00 0.00 etv6flanking 12851 12998 49264 C L2-3_DRe LINE/L2 2954 3101 1967
329 33.11 0.00 0.00 etv6flanking 12851 12998 (49264) C L2-3_DRe#LINE/L2 (1967) 3101 2954 m_b1s001i14
etv6flanking 12851 GAGGGTTTGTTAGCCTGTCGACGGTAGCAAATAAGGCGTGTGTATTGTTA 12900
i v i v v iv v v iv i i v i i v
C L2-3_DRe#LINE 3101 GGGGGTTTGTGAGTCTCTCTATCGTTGCAAAGAGTGTGCGAGCATTATTT 3052
etv6flanking 12901 TTGTTGTTGGTTATAATGTCAGAGAAGAAGGACTGCCTTGCTTTTCTAAG 12950
vv i v v iiv i i v i v vv vi v
C L2-3_DRe#LINE 3051 AAGTTGCTGTTTATAAGGCTTGAAAAGAAAGTCTGTCTAGCAGTGTTTAG 3002
etv6flanking 12951 TTCAAAATTATAATTGCGAAGTCTCTCTTTATAGATACTACAGTGAAC 12998
v v v iviii v v i i i i
C L2-3_DRe#LINE 3001 TTCCATATTAAAGGCATGAAGACTGTCTTTATAGATATTATAATGGAC 2954
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 42.98
Transitions / transversions = 0.88 (23/26)
Gap_init rate = 0.00 (0 / 147), avg. gap size = 0.0 (0 / 0)
+ 2318 8.9 0.6 0.0 etv6flanking 13013 13348 (48914) + DNA-2-34_DR DNA/TcMar-ISRm11 873 1210 (12) 29
ANNOTATION EVIDENCE:
2318 8.93 0.60 0.00 etv6flanking 13013 13348 48914 + DNA-2-34_DR DNA/TcMar-ISRm11 873 1210 12
2318 8.93 0.60 0.00 etv6flanking 13013 13348 (48914) DNA-2-34_DR#DNA/TcMar-ISRm11 873 1210 (12) m_b1s001i15
etv6flanking 13013 AAACATAAAAGTCTATGTAGTTTGTATTATGTCAGTAACAGCCAGTGTTT 13062
v i v i v ii i i
DNA-2-34_DR#D 873 AAACATAAAAGTCTCTGCAGTTTTTGTAATGTCAACAATAGCCAGTATTT 922
etv6flanking 13063 TGAAACCTGTTGTACTTTGATTGACTGGAAGGAGCTTGTGAAGTGAAAAC 13112
v v v v v
DNA-2-34_DR#D 923 TGAAACCTGGTGTACTTTGATTGACTGCATGTACCTTGTGAAGTGAAAAC 972
etv6flanking 13113 AAGAGTTATTGTTTGACAGAATAATTTCATTTTGAGTCAGATTTCCAGTG 13162
v v ?
DNA-2-34_DR#D 973 AAGTGTTATTCTTTGACAGAATNATTTCATTTTGAGTCAGATTTCCAGTG 1022
etv6flanking 13163 TTTTGGTAAAGTTAGTGTCTGCAGAAAAAGATGT--TCTATTTTGAAATG 13210
v i --
DNA-2-34_DR#D 1023 TTTTGGTAAAGTTAGTGTGTGCAGAGAAAGATGTGCTCTATTTTGAAATG 1072
etv6flanking 13211 AAGAGTTAGTATATATTTAACGAAATGTGCTTTTGACAAGAAAAGAATCC 13260
i ii v vv
DNA-2-34_DR#D 1073 AAGAGTTAGTATATATTTAACAAAATGTATTTTTGAGAAGAAAATTATCC 1122
etv6flanking 13261 ATCTGGCTAATTGTGCTTTGTAGGTGTGAGTCTGTGTTAAGAGTTTAGAA 13310
i i i
DNA-2-34_DR#D 1123 ATTTGGCCAATTGTGTTTTGTAGGTGTGAGTCTGTGTTAAGAGTTTAGAA 1172
etv6flanking 13311 AAAGTATCTCAAGTATGGGTAAGCACTTGTGAGCGATT 13348
v i v
DNA-2-34_DR#D 1173 AAAGTATCTGAAGTATGGGTAAGCGCTTGTTAGCGATT 1210
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 9.24
Transitions / transversions = 0.88 (14/16)
Gap_init rate = 0.00 (1 / 335), avg. gap size = 2.00 (2 / 1)
+ 414 18.8 2.1 0.0 etv6flanking 13354 13449 (48813) C DNA7-N2_DR DNA/hAT-hAT6 (1916) 98 1 30
ANNOTATION EVIDENCE:
414 18.75 2.08 0.00 etv6flanking 13354 13449 48813 C DNA7-N2_DR DNA/hAT-hAT6 1 98 1916
414 18.75 2.08 0.00 etv6flanking 13354 13449 (48813) C DNA7-N2_DR#DNA/hAT-hAT6 (1916) 98 1 m_b1s001i16
etv6flanking 13354 ATTTTGC--CGTGAGAAATTGGTTGTGTGGCGTGAGAGTGTGTGAAAACA 13401
v -- v v i v v ?
C DNA7-N2_DR#DN 98 ATTTTTCTGCGTGAGAAAATGGATGTGTGGCGTGAGAGCGTGAGAATACN 49
etv6flanking 13402 CACAAAAGCGTGTGTCACACGGCGAAACCGTGAGAGTTGGTAGCTCTG 13449
vv vv vv v v vv i i
C DNA7-N2_DR#DN 48 GTCAATTGCGTGACTCTCACGCCGAATGCGTGAGAGTTGGCAGCCCTG 1
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 20.78
Transitions / transversions = 0.20 (3/15)
Gap_init rate = 0.01 (1 / 95), avg. gap size = 2.00 (2 / 1)
+ 6179 23.1 3.7 2.5 etv6flanking 13744 15377 (46885) + Mariner-N6_DR DNA/TcMar-Tc1 1 1652 (0) 31
ANNOTATION EVIDENCE:
6179 23.05 3.67 2.54 etv6flanking 13744 15377 46885 + Mariner-N6_DR DNA/TcMar-Tc1 1 1652 0
6179 23.05 3.67 2.54 etv6flanking 13744 15377 (46885) Mariner-N6_DR#DNA/TcMar-Tc1 1 1652 (0) m_b1s001i17
etv6flanking 13744 CAGTCGTATGCATAAGTTTAGGCACCCCTCTGAGGCTGCATGATAATTTA 13793
iv v i i v i ? v i
Mariner-N6_DR 1 CAGTTTTATGCAAAAATTTGGGCACCCCTCTGTGGCTGCATAATNATGTG 50
etv6flanking 13794 CTCTTTCTTCACCAAAAAAAGATCACAGTTGTGTAACATTAATTTTCTAG 13843
i i- i i i vivi iv viv
Mariner-N6_DR 51 CTCTTTCTTTAT-AAGAGAAGATCGCAGTGAAATGCCATTCGGTTTCTAG 99
etv6flanking 13844 TTAACACTGAGTGCTGGGGTGTTTTCCAGACAAAGATATTTAGTGTAGCA 13893
vv vi iii iv vvi i i i iv
Mariner-N6_DR 100 AGAAAGCTAGATAATGTCATGTTTTTCAGACAGAAATACGTAGTGTAGCA 149
etv6flanking 13894 GTATTTAGTTGTCTGAAATTAAATCAAATGTGAAAAATAGGCTGTTCAAA 13943
v v v ii vv i v
Mariner-N6_DR 150 GTATTGAGATGTGTGAAATTAAATTGAAACTGAAAAATAGGCTATGCAAA 199
etv6flanking 13944 AGTTTGGGCACCCTTATCATTT-TGTTGATTTGAATACCTGTACTTACTA 13992
i- v - v v v v i v
Mariner-N6_DR 200 AGTTTGGGCACCCTC-TCTTTTGTGTGGATTTCAAAACCTGTAGTCACTT 248
etv6flanking 13993 AATACTGATTAAATGCAACACATAATTA------------GTCTGAAGAA 14030
i i v i v i------------ ?i ivi
Mariner-N6_DR 249 AATGCTGATTGATTACAACACAAAATTGATNNNNCGCGNCGNTTGAGTGA 298
etv6flanking 14031 CTC--GTTA-----------AGCCTTCA----ATTCTATAGAAAGGTGCA 14063
-- ???----------- i v ---- i - v v
Mariner-N6_DR 299 CTCACGNNNNCGTGCGNCGNAACCTTAACCGAATCCTA-ACACAGGTGCA 347
etv6flanking 14064 TCCAGTCATTAGAAAAGGA-ATTTAAGGGAGCCAATTGCAAGTTGTGCTT 14112
v i v - - iv ii v
Mariner-N6_DR 348 ACCAATCATGA-AAAAGGATATTTAAGATAGCTGATTGCTAGTTGTGCTT 396
etv6flanking 14113 CTCTTTGATTCTCCTCCGAACAGTGGCAACATGGGGGCAATCT--AAACA 14160
i - v vvv ?i v i --- i -- v
Mariner-N6_DR 397 CTCCTT-ATTGTGAACCNGAAAGTAGCAACATGGG---AACCTCAAAAGA 442
etv6flanking 14161 ACTATCGAATGATCTAAAAACAAAGATTGTCCAGCAGGATGGTTTAGGGG 14210
vi v i v i vi i v iv iv i
Mariner-N6_DR 443 ACTTCCTAATGACCTAAAAACTAGGATAATTCACCAACATGAATTAGGAG 492
etv6flanking 14211 A-GGCTACAACACGTGACCCCGGAGGTTTCAGCGATCAGTTTCCACTGTG 14259
- v i v v iv i v ii v ivvv vi i v v
Mariner-N6_DR 493 AAGGATGCAAAAAGCTATCACAAAGGTTTAAAGTCTCTATCTCCACAGTC 542
etv6flanking 14260 AGGAATGTTATTAAGAAA-TGGAAGGCAACAGGCACAGTCCTTGTTAAGG 14308
i i - v - v v i v
Mariner-N6_DR 543 AGAAATAT-AGTAAGAAAATGGAAGGCCACAGGAACAGTTCTTGTGAAGG 591
etv6flanking 14309 CCAGAAGTGGCAGGCCAAGAAAAATATCGGAGAGGCAAAGGCGAAGAATG 14358
vv v vi i v i
Mariner-N6_DR 592 AAAGATGTGCTAGACCAAGAAAAATATCTGAAAGGCAAAGGCGAAGAATG 641
etv6flanking 14359 GTCGGAATGGTCAAGGACAA-CCATCAGACCACCTCCAAAGACCTGCAAG 14407
ii vi - - v v i
Mariner-N6_DR 642 GTTAGAATGGTCACAGACAAACCA-CAGACCACCTCCAAAGAGCTCCAGG 690
etv6flanking 14408 GTCATCTTGCTGCAGATGGTGTCACTGAGCATTGCTCGACCATTCAGCGC 14457
iv v ii i vi i i v vi i
Mariner-N6_DR 691 AACATCTTGCTGCTGATAATGTCATTGTACATCGTTCCACAGTCCAGCGC 740
etv6flanking 14458 TCACTGCACAGAGAACAGCTGGATGGGAGAGTGAAGCGGAAGAAGCCTTT 14507
v v v i vi i - v i
Mariner-N6_DR 741 ACTCTTCACAAAGAACAGCTCAATGGAAG-GTGATGCAGAAGAAGCCTTT 789
etv6flanking 14508 TCT---------------------TCGCTTGAGGTATGCAAAACTACATT 14536
--------------------- i iviv i
Mariner-N6_DR 790 TCTGCATTCTGCCAACAAGAAGAGTCGTTTGAGGTATGCAAAGGCTCATC 839
etv6flanking 14537 TGAATAAGCCAGGCTCATATTGGAACAAAGTGCTGTGGACTGATGAGACA 14586
i i v iv v v vi i v -----
Mariner-N6_DR 840 TGGACAAGCCTGAATCATTTTGGAAAAATATACTGTGGACAGATG----- 884
etv6flanking 14587 AAGCTGGAGCCATTTGGTCACAACAAGAGGCGTTACGCATGGAGGCAAAA 14636
-----------------i v v i vi v v
Mariner-N6_DR 885 -----------------CCACAACCATAGGCGCTTTGCATGGCGGAAAAA 917
etv6flanking 14637 AAGCACAGCATTGCTAGAAAAGCACTGGCTGCCCACAGTAAAATGTGGTG 14686
i i v vi i v iv v i v i
Mariner-N6_DR 918 GAACACAGCATTCCAGGAGAAGAACCTGCTCCCTACTGTAAAATATGGTG 967
etv6flanking 14687 GGGGGTCCATCATGCTGTGGGGCTGTGTGGCTAGTGCAGGTACTGGGAAT 14736
i v v ii i i
Mariner-N6_DR 968 GAGGGTCCATCATGCTGTGGGGATGTGTGGCAAGCACAGGTACTGGAAAC 1017
etv6flanking 14737 CAAGTTAAAGTTGAGGGTCGCATAAATTCAACTCAGTACCAGCAAATTCT 14786
vv i i i i ii v i i i
Mariner-N6_DR 1018 CTTGTCAGAGTTAAAGGTCGCATGGATTCCACCCAGTATCAGCAGATTCT 1067
etv6flanking 14787 TGACAATAATGTTCTAGAATCTGTAACAAAGCTGGAGTTATGGTGGAGTT 14836
vi v i vi v v vi i i i ii i
Mariner-N6_DR 1068 GAAGAACAATGTTCAGGAATCAGTCAAGAGGCTGAAGTTACGGCAGGGTT 1117
etv6flanking 14837 GGGTGCTCCAGCAGGACAACGACCCGAAGCATAGCTCCAGATCCA-CGAG 14885
i i i i i i i i - i
Mariner-N6_DR 1118 GGATGTTTCAGCAGGACAATGACCCAAAGCACAGTTCCAGATCTACCAAG 1167
etv6flanking 14886 TCATTCATGCAGAGGAACAACTACAATGTTCTGGAACGACC-TCCCAGTC 14934
vv vv iv i - i i i -
Mariner-N6_DR 1168 GAATTCATGCTCAGACACGA-TACAATGTTCTAGAATGGCCATCCCAGTC 1216
etv6flanking 14935 GCCACACTGGAATATAATTGAAAATCTATGGGGTGACTTGAAGCGGGCTG 14984
v v v i v i iv i iv i
Mariner-N6_DR 1217 CCCAGACTTGAACATCATCGAAAATCTATGGATTGATTTGAAAAGGGCCG 1266
etv6flanking 14985 TCCACGCTCGGCACCAATCAACCCTGACTGAACTGGAGATGTATTGTAAG 15034
i v v vi v i
Mariner-N6_DR 1267 TTCACGCTCGGCACCCATCAAACCTGACTGAACTGGAGAAATTTTGCAAG 1316
etv6flanking 15035 GAAGAATGGTCCAAAATACCTCCATCCAGAATCCAGACTCTCATCAGAGA 15084
i i i v v i ivv i vvv
Mariner-N6_DR 1317 GAAGAATGGCCCAAAATGCCTTCAGCAAGAATTCAGGGACTTATCCTTGA 1366
etv6flanking 15085 CTAGAAGAAGCGTCTAGACTCTAGAGGCTGTTATTTTTTCAAAAGGAGGC 15134
v -- ----- ivv v
Mariner-N6_DR 1367 CTATAAGAAGCGTCT--AC-----AGGCTGTTATTTCAGCAAAAGGTGGC 1409
etv6flanking 15135 TCTACTAAATATTAATGTGATTTTCCTTTTGGGGTGCCCAAATGTATGCA 15184
v v v i v v i v v v
Mariner-N6_DR 1410 TGTACAAAAGATTGATGTCATTATTCTGTTGGGGTGCCCAAATTTTTGCA 1459
etv6flanking 15185 CCTGTCTAATTTTCTTATGATGCATATGACATATTTTCTGTTTATCAAAT 15234
iv v ? ivi v vi vviv v i
Mariner-N6_DR 1460 CCTGTCTGTTTTTGTTANGACTTAAATTGCATTGCATCTGTTGATTAAAT 1509
etv6flanking 15235 ACACCTTATTTCACTGCTTAAATATCACTGTGTCCATGAAGTATTATATA 15284
v iv v vvi v i ii v v v iii v v
Mariner-N6_DR 1510 AAATGTTATGTCAGAACTGAAATGTTGCTTTTTCCCTAGGGTATAAAATA 1559
etv6flanking 15285 TATGACAAA-GAAGTTCCTGCTCTAAACGCCCAACAATTTATAGATGAAA 15333
-v - i v v i i v v i ivi i v viv
Mariner-N6_DR 1560 TAT-CCAAATGAAATTGCTGATTTGAAAGGCCAGCAGGCTATGGCTTGCA 1608
etv6flanking 15334 GTAATGGAGATTATCAGGGGTGCCTAAACTTTTGCATATGACTG 15377
i v i i v i v
Mariner-N6_DR 1609 ATTATGAAAATTATCAGGGGTGGCCAAACTTTTGCATAAGACTG 1652
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 27.24
Transitions / transversions = 1.03 (186/181)
Gap_init rate = 0.03 (56 / 1633), avg. gap size = 1.82 (102 / 56)
+ 1217 29.4 3.0 4.0 etv6flanking 15553 16327 (45935) C L2-2_DRe LINE/L2 (971) 3267 2501 32
ANNOTATION EVIDENCE:
1217 29.45 2.97 4.04 etv6flanking 15553 16327 45935 C L2-2_DRe LINE/L2 2501 3267 971
1217 29.45 2.97 4.04 etv6flanking 15553 16327 (45935) C L2-2_DRe#LINE/L2 (971) 3267 2501 m_b1s001i18
etv6flanking 15553 CATCCACTGAGAGATGTCGGTCAGACAGGCAGAGATTCGCGCCGCCACCT 15602
v v i i viv i v v v i vv -
C L2-2_DRe#LINE 3267 CATCCAGTGTGAAATATCCAACAGGCAGGCTGAGATGCGAGCTGGAACC- 3219
etv6flanking 15603 GTGTTTCGGA-CAGTGGGA----ACGAGAAGATCAGTTGGGTGTCATCGG 15647
v ---- - vii ---- v i vvi i i i
C L2-2_DRe#LINE 3218 GAG----GGATCATCAGGATGAAAAGAGAGGTATAGCTGGGTATCATCAG 3173
etv6flanking 15648 CATAGCTATGGTAGGAAAAACCATGCGAACGAATGACAGAGCCGAGAGAA 15697
vi i v ivvvi i v iv v -
C L2-2_DRe#LINE 3172 CATAGCAGTGGTAGGAGAATCCATGTCTCTGGATGACTGGTCCTAGAGA- 3124
etv6flanking 15698 TGA-GTGTACAGAGAGAAGAGGAGGGGACCCAGGATGGAGCCTTGAGGAA 15746
- v vi i v v v i ii v
C L2-2_DRe#LINE 3123 TGATGTGTAGATGGAGAAGAGAAGTGGCCCAAGAACAGAGCCTTGAGGTA 3074
etv6flanking 15747 CCCCAGTAGTGAGAGGACAAGGATCAGACACAGATCCTCTCCAAGTTACC 15796
iv v v viivi i ii vvv i vi
C L2-2_DRe#LINE 3073 CCCCAGTGTTTAGATGCTGTAGGTTGGACACCTCTCCCCTCCAAGACACC 3024
etv6flanking 15797 CGGTAAGTG--CGGTCGGTGAGGTAGGAAGAGAAAAGAGCGAGTG----- 15839
-- i i -- v i v i vvv ----- v v -----
C L2-2_DRe#LINE 3023 C--TGAATGACCTGTCAGAGAGGTAAGATCTGAA-----CCATTGTATAA 2981
etv6flanking 15840 CAGTGCCTGAGATCCCCAGGTCCTGAAGAGAAGAGAGAAGGATCTGGTGG 15889
i vi iv vvv vi v v v v
C L2-2_DRe#LINE 2980 CAGTGCCCGCAACGCCCAGTGACTCGAGCGTAGATAGCAGGATCTGGTGG 2931
etv6flanking 15890 CTCACGGTGTCAAATGCAGCAGAAAGGTCTAGATTTCTAGAAGGATAAGG 15939
i v i v v v i i -----i i --- i
C L2-2_DRe#LINE 2930 TTGACAGTGTCAAAAGCAGCTGACAAGTCCAG-----CAAA---ATGAGG 2889
etv6flanking 15940 ACAGAGGAGAGAGAGGCTGCTCTAG-CAGTGTGAAGCTGCTCAGAGACAG 15988
v v vvv v i - v - v v viv v
C L2-2_DRe#LINE 2888 ACTGATGATTTAGAGTCTGCTTTAGCCAGTCTG-AGATCCTCCACGACCG 2840
etv6flanking 15989 CAAGGAGGGCAGTCTCTGTTGAGTGGCCGGCCTTGAATCCAGACTGGTGG 16038
vi v v vvi i v i i v v
C L2-2_DRe#LINE 2839 AGAGCAGGGCAGTCTCAGTTGAGTGGCCTTTCTTAAAGCCGGATTGCTTG 2790
etv6flanking 16039 GGGTGAAGAAGGTTGTTTCTGTG-GAGATAGG--AGGACACTTGGTTAAA 16085
vv vv vi i - v -i v v-- -- i i
C L2-2_DRe#LINE 2789 TTGTCCATGAGATTGTTT-TGAGTAAGAAAGTCCAGG--ACTTGATTGAA 2743
etv6flanking 16086 GATAGCTCGCTCCAGAGTTTTGGAAAGAAAAGGAAGAAGAGAGACCGGTC 16135
v ivi iv i i vv vi v v i v i
C L2-2_DRe#LINE 2742 CACTACTTTCTCCAGAATCTTGGCCATGAATGGAAGCAGGGATACTGGTC 2693
etv6flanking 16136 TGTAGTTTCTGACTTCAGACG---GGTCGAGCGTGGGTTTCTTCAGGAGA 16182
iii v -- - --- v vv i v v
C L2-2_DRe#LINE 2692 TGTAGTTTTCAAGT--AG-CGTATGGTCCAGGTTGGGTTTCTTTAGCAGT 2646
etv6flanking 16183 GGGTTGACTCTGGCCTCCTTCAGAGAGTTGGGGAAACAGCC--AGTTGAG 16230
v v i i v v iv ?iv vv i -- ii
C L2-2_DRe#LINE 2645 GGGGTTACCCTAGCCTGCTTAAATGNAGTGGGGAATAAACCAGAGTCAAG 2596
etv6flanking 16231 AGGGAGCTGTTAATAAGATGGGTGAG-AAAGGTCAGAAGGTCAGGAGCAA 16279
-- vv v vi i v -ivv vv vv - vi
C L2-2_DRe#LINE 2595 A--GATGTGTTAATTATGTGAGTCAGTGTTGGTATGACTG-CAGGAGAGA 2549
etv6flanking 16280 CAGCCTGGAGGATGTGAGACGGGACAGGGTCAAGGGCACAGGTGGTCG 16327
ii i v i vi v i ii i i v v i
C L2-2_DRe#LINE 2548 TGGCTTGCAAGAGATGAGAGGGAATGGGATCGAGTGGACAGGTGGTTG 2501
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 36.55
Transitions / transversions = 0.74 (93/126)
Gap_init rate = 0.05 (42 / 774), avg. gap size = 1.29 (54 / 42)
+ 666 28.0 0.3 1.9 etv6flanking 17780 18096 (44166) C Gypsy121-I_DR LTR/Gypsy (3086) 1840 1529 33
ANNOTATION EVIDENCE:
666 27.98 0.32 1.92 etv6flanking 17780 18096 44166 C Gypsy121-I_DR LTR/Gypsy 1529 1840 3086
666 27.98 0.32 1.92 etv6flanking 17780 18096 (44166) C Gypsy121-I_DR#LTR/Gypsy (3086) 1840 1529 m_b1s001i19
etv6flanking 17780 CAGGCCACACCCGACCGCCAGCCAGGTCATTCCCTAAAATGACCTGTACT 17829
?v v ? v ? i i ? v i ?vii ?
C Gypsy121-I_DR 1840 CANCCCAAACNCGTCCGCCNGCCAGATTATTNCCAAGAATGACNGACACN 1791
etv6flanking 17830 CCAGCCATAGGCAGCGTAGGTCGCACTCCCATGACCAGATCACCTTTCAC 17879
vv i? ? v i ? v ? vvv v i i v?
C Gypsy121-I_DR 1790 CCTTCCACNGGNAGGGCAGGTCNCACGCCNAGCTCCACATCGCCCTGNAC 1741
etv6flanking 17880 TAAATTCGAGCTCAAAGTAAATTTATGCTTTGGCGCCGAAAAGACCGCCA 17929
i i iv ?i? i? ? vii vvv i ? v ?viivvii
C Gypsy121-I_DR 1740 CAAGTCAGANTNCAGNGTNACCCTATGCAGGGGCACNGACANCGTATTTA 1691
etv6flanking 17930 AACCCATTCCTCGGG-CAGCAGCACAAGTGAACCAGTGTCCGTTTCTGAA 17978
v v ? v i- i ? i- vv -- ??? vi i??v
C Gypsy121-I_DR 1690 ACCCAATNCCACGGATCAACANCG-ACTTG--CCAGTGNNNGACTCCNNT 1644
etv6flanking 17979 GAAAAATTTAACACCGACTCTACAATGAACGATTCCAGAGCCCCTGAGTC 18028
i ?vvi i v i v v vv ?iiv v v
C Gypsy121-I_DR 1643 GAGAANGGCAATACGGACTCCAAAATGAAGGAAGCNGATGACCCTGTGTC 1594
etv6flanking 18029 TCTTGGAATCTTCACCGGTATTTTTGTCTCACTGCCTACCAGTGAAACAA 18078
i vvi i vi i?i??--- i i? ??v ? v
C Gypsy121-I_DR 1593 CCGGAGAATTTTCACCGCCACNCNN---TCGCCNCCTNNAAGNGACACAA 1547
etv6flanking 18079 AACCATCCGACACAAATG 18096
v i
C Gypsy121-I_DR 1546 AACCATCCGAAACAAACG 1529
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 37.98
Transitions / transversions = 0.89 (41/46)
Gap_init rate = 0.02 (7 / 316), avg. gap size = 1.00 (7 / 7)
+ 264 26.7 0.0 0.0 etv6flanking 18293 18352 (43910) C Gypsy121-I_DR LTR/Gypsy (3639) 1612 1553 33
ANNOTATION EVIDENCE:
264 26.67 0.00 0.00 etv6flanking 18293 18352 43910 C Gypsy-180_DR-I LTR/Gypsy 1553 1612 3639
264 26.67 0.00 0.00 etv6flanking 18293 18352 (43910) C Gypsy-180_DR-I#LTR/Gypsy (3639) 1612 1553 m_b1s001i20
etv6flanking 18293 TTTGTTTTTTAACACCGGACACTTATTTCGCCAGTGTCCCTTGCCAAAAC 18342
iii i i i iv v ii v ii
C Gypsy-180_DR- 1612 TTTGCCCTTCAACACCGGACATTCATTTTTCCAGTGACCCTTATCTAGGC 1563
etv6flanking 18343 AATAATTACA 18352
vi
C Gypsy-180_DR- 1562 AATATCTACA 1553
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 35.01
Transitions / transversions = 3.00 (12/4)
Gap_init rate = 0.00 (0 / 59), avg. gap size = 0.0 (0 / 0)
+ 13 0.0 0.0 0.0 etv6flanking 18690 18706 (43556) + (TAT)n Simple_repeat 1 17 (0) 34
ANNOTATION EVIDENCE:
13 0.00 0.00 0.00 etv6flanking 18690 18706 43556 + (TAT)n Simple_repeat 1 17 0
13 0.00 0.00 0.00 etv6flanking 18690 18706 (43556) (TAT)n#Simple_repeat 1 17 (0) m_b1s252i11
etv6flanking 18690 TATTATTATTATTATTA 18706
(TAT)n#Simple 1 TATTATTATTATTATTA 17
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 16), avg. gap size = 0.0 (0 / 0)
+ 317 13.3 0.0 0.0 etv6flanking 18707 18751 (43511) + DNA-8-23_DR DNA/hAT 467 511 (300) 35
ANNOTATION EVIDENCE:
317 13.33 0.00 0.00 etv6flanking 18707 18751 43511 + DNA-8-23_DR DNA/hAT 467 511 300
317 13.33 0.00 0.00 etv6flanking 18707 18751 (43511) DNA-8-23_DR#DNA/hAT 467 511 (300) m_b1s001i21
etv6flanking 18707 TTAAATGAGTCAGTGCCTCACCAACCATGAACTTCACCGCACGTC 18751
i v i ii i
DNA-8-23_DR#D 467 TTGAAAGAGTCAGTGCCTCACCAGCCACAAACCTCACCGCACGTC 511
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 15.15
Transitions / transversions = 5.00 (5/1)
Gap_init rate = 0.00 (0 / 44), avg. gap size = 0.0 (0 / 0)
+ 14 4.3 4.2 0.0 etv6flanking 19328 19351 (42911) + (AATA)n Simple_repeat 1 25 (0) 36
ANNOTATION EVIDENCE:
14 4.35 4.17 0.00 etv6flanking 19328 19351 42911 + (AATA)n Simple_repeat 1 25 0
14 4.35 4.17 0.00 etv6flanking 19328 19351 (42911) (AATA)n#Simple_repeat 1 25 (0) m_b1s252i12
etv6flanking 19328 AATAAA-AAATGAATAAATAAATAA 19351
- i
(AATA)n#Simpl 1 AATAAATAAATAAATAAATAAATAA 25
Matrix = Unknown
Transitions / transversions = 1.00 (1/0)
Gap_init rate = 0.04 (1 / 23), avg. gap size = 1.00 (1 / 1)
+ 1453 10.7 2.0 3.6 etv6flanking 19395 19646 (42616) + DNA-2-34_DR DNA/TcMar-ISRm11 600 847 (375) 37
ANNOTATION EVIDENCE:
1453 10.71 1.98 3.63 etv6flanking 19395 19646 42616 + DNA-2-34_DR DNA/TcMar-ISRm11 600 847 375
1453 10.71 1.98 3.63 etv6flanking 19395 19646 (42616) DNA-2-34_DR#DNA/TcMar-ISRm11 600 847 (375) m_b1s001i22
etv6flanking 19395 TTTTATCTGGGTTTTTGTTCAGAATGCTCTTGTGTGTTTCTTTGATATTT 19444
v i vv ? v v
DNA-2-34_DR#D 600 TTTTTTTTGTTTTTTTNTTCAGAATGCTCTTGTGTGTTTCATGGATATTT 649
etv6flanking 19445 TGTTCACTGTAAGCAATACTGTAAAACCTTTTCTGTTCCATCAGACTGTA 19494
i i v i -
DNA-2-34_DR#D 650 TGTTCACTGTAAGCAATACTGTAAAACTTTTTCTGTTCTATCATACCGT- 698
etv6flanking 19495 AACAGTAAAAATACTGTACCTCCTTTAGTAAACAGTAAAGGAGAAAAAAA 19544
---- vvv-- v -
DNA-2-34_DR#D 699 ----GTTTC--TACTGTACCTCCTGTAGTAAACAGTAAAGGA-AAAAAAA 741
etv6flanking 19545 AATGTTTAGTTTCTTACTGGAATGCTTTTGAATGTGAACATTAC-----A 19589
i - i i -----
DNA-2-34_DR#D 742 AATATTT-GCTTTTTACTGGAATGCTTTTGAATGTGAACATTACTGTACA 790
etv6flanking 19590 TGTTGGCATACAGTTCCCAACCAAGACATGTAGTGTAAAAACAGTGGACT 19639
v i v v v i i
DNA-2-34_DR#D 791 TGTGGACATACAGTTCCCAACCAAGAAATTTAGTGTCAAAACGGTGGATT 840
etv6flanking 19640 ACATGCT 19646
i i
DNA-2-34_DR#D 841 GCATGTT 847
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 10.74
Transitions / transversions = 0.86 (12/14)
Gap_init rate = 0.04 (10 / 251), avg. gap size = 1.40 (14 / 10)
+ 243 10.8 0.0 0.0 etv6flanking 20069 20105 (42157) C DNA-8-22_DR DNA/hAT? (497) 937 904 38
ANNOTATION EVIDENCE:
243 10.81 0.00 0.00 etv6flanking 20069 20105 42157 + hAT-N31_DR DNA/hAT-Ac 1 37 1425
243 10.81 0.00 0.00 etv6flanking 20069 20105 (42157) hAT-N31_DR#DNA/hAT-Ac 1 37 (1425) m_b1s001i23
etv6flanking 20069 TAGGGATGGGTATCGTTTGGTTTTTTTCCGATACCAG 20105
v v i i
hAT-N31_DR#DN 1 TAGGGTTGGGTATCGTTTGGGTTTTTTTCGATACCGG 37
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 8.88
Transitions / transversions = 1.00 (2/2)
Gap_init rate = 0.00 (0 / 36), avg. gap size = 0.0 (0 / 0)
+ 12 11.1 3.2 3.2 etv6flanking 20391 20421 (41841) + (CCTGCT)n Simple_repeat 1 31 (0) 39
ANNOTATION EVIDENCE:
12 11.09 3.23 3.23 etv6flanking 20391 20421 41841 + (CCTGCT)n Simple_repeat 1 31 0
12 11.09 3.23 3.23 etv6flanking 20391 20421 (41841) (CCTGCT)n#Simple_repeat 1 31 (0) m_b1s252i13
etv6flanking 20391 CCTGCTGCTGCCCCTGCTCTCTCCTCCT-CTC 20421
v i - v -
(CCTGCT)n#Sim 1 CCTGCTCCTGCTCCTGCTC-CTGCTCCTGCTC 31
Matrix = Unknown
Transitions / transversions = 0.50 (1/2)
Gap_init rate = 0.07 (2 / 30), avg. gap size = 1.00 (2 / 2)
+ 18 16.1 7.1 0.0 etv6flanking 21020 21061 (41201) + (TC)n Simple_repeat 1 45 (0) 40
ANNOTATION EVIDENCE:
18 16.12 7.14 0.00 etv6flanking 21020 21061 41201 + (TC)n Simple_repeat 1 45 0
18 16.12 7.14 0.00 etv6flanking 21020 21061 (41201) (TC)n#Simple_repeat 1 45 (0) m_b1s252i14
etv6flanking 21020 TCTCTC-CTCACTCTC-CTAACTCTC-CTAACTATCTCTCTCTCT 21061
- v - vv - vv v
(TC)n#Simple_ 1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 45
Matrix = Unknown
Transitions / transversions = 0.00 (0/6)
Gap_init rate = 0.07 (3 / 41), avg. gap size = 1.00 (3 / 3)
+ 941 24.4 4.3 6.3 etv6flanking 21342 21665 (40597) + Copia-8-I_DR LTR/Gypsy 657 974 (646) 41
ANNOTATION EVIDENCE:
941 24.37 4.32 6.29 etv6flanking 21342 21665 40597 + Copia-8-I_DR LTR/Gypsy 657 974 646
941 24.37 4.32 6.29 etv6flanking 21342 21665 (40597) Copia-8-I_DR#LTR/Gypsy 657 974 (646) m_b1s001i24
etv6flanking 21342 GCTACCCCCGCCGAGAGA-GCCGCTGCCA---CTGCCACTGCCGCCGCCG 21387
i v - v- i i --- vv ?
Copia-8-I_DR# 657 GCTGCCACCGCC-AGAGCTGCCACCGCCAGAGCTGCCAGAGCCGNCGCCG 705
etv6flanking 21388 CCGCCGCCGCTTCTGCCGCCGCTGATGCCGCAGTCATCGCC---ACCAGC 21434
iv i v ivv i i i v ---i v
Copia-8-I_DR# 706 CCGCCAGCGCCTCAGCCAGAGCCGACGCCGCAGCCAGCGCCTCAGCCAGA 755
etv6flanking 21435 ACCGCCGCCAAAGTCTCTGCCGGCGCCGCTGCCACCGCCGCTGCCGCTGT 21484
i v iv ------ i v v vv vi v i
Copia-8-I_DR# 756 GCCGACGCCGCAG------CCAGCGCCTCAGCCAGAGCCGACGCCGCAGC 799
etv6flanking 21485 AGTCGCC---GCCAAAAACGCTGCCACCGCCGTTGCCCCCAACACCGGGG 21531
viv --- i iv vi i v ivi i vi--- i i
Copia-8-I_DR# 800 CAGCGCCTCAGCCAGAGCCGACGCCGCAGCCAGCGCCTCAG---CCAGAG 846
etv6flanking 21532 CCATCACCGCCGCCGCCGCTGCCTCTGCCACCGCCGACGCCGCCGCCAAA 21581
i---v v ivi v vv v i-
Copia-8-I_DR# 847 CCG---ACGCCGCAGCCAGCGCCTCAGCCAGAGCCGACGCCGCAGCCAG- 892
etv6flanking 21582 GCCGCCCAAGCCACCGCCGACGCCGCTGCCACGAAAGCCGCCGCAGCCGC 21631
-- iv vv ? --- i v v ?
Copia-8-I_DR# 893 --CGCCTCAGCCAGAGCCGACGCCGCNGCC---AGAGCCGACGCCGCNGC 937
etv6flanking 21632 T-GCGACCT---CCAAAGCCGCCGCCGCTGCCCTCGCC 21665
i- - --- i v ? vv
Copia-8-I_DR# 938 CAGCG-CCTCAGCCAGAGCCGACGCCGCNGCCAGCGCC 974
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 25.59
Transitions / transversions = 0.85 (34/40)
Gap_init rate = 0.08 (26 / 323), avg. gap size = 1.31 (34 / 26)
+ 60 1.8 0.0 0.0 etv6flanking 22022 22077 (40185) + (AT)n Simple_repeat 1 56 (0) 42
ANNOTATION EVIDENCE:
60 1.81 0.00 0.00 etv6flanking 22022 22077 40185 + (AT)n Simple_repeat 1 56 0
60 1.81 0.00 0.00 etv6flanking 22022 22077 (40185) (AT)n#Simple_repeat 1 56 (0) c_b1s251i6
etv6flanking 22022 ATATATATATATATATATATATATATATATATATATATATATATATATTT 22071
v
(AT)n#Simple_ 1 ATATATATATATATATATATATATATATATATATATATATATATATATAT 50
etv6flanking 22072 ATATAT 22077
(AT)n#Simple_ 51 ATATAT 56
Matrix = Unknown
Transitions / transversions = 0.00 (0/1)
Gap_init rate = 0.00 (0 / 55), avg. gap size = 0.0 (0 / 0)
+ 402 17.3 8.0 0.0 etv6flanking 22084 22158 (40104) C DNA-8-23_DR DNA/hAT (298) 513 433 43
ANNOTATION EVIDENCE:
402 17.33 8.00 0.00 etv6flanking 22084 22158 40104 C DNA-8-23_DR DNA/hAT 433 513 298
402 17.33 8.00 0.00 etv6flanking 22084 22158 (40104) C DNA-8-23_DR#DNA/hAT (298) 513 433 m_b1s001i25
etv6flanking 22084 GTGACGTGCGGTGAGGTTCATGGTTGGTGAGGCTCTGACTCCTCTAGTGT 22133
ii i v i ii iv
C DNA-8-23_DR#D 513 GTGACGTGCGGTGAGGTTTGTGGCTGGTGAGGCACTGACTCTTTCAAAGT 464
etv6flanking 22134 CAGATTT------ACAAATATATAAACCCAA 22158
------ i vv i
C DNA-8-23_DR#D 463 CAGATTTNCGNNNACAAACATATCCACTCAA 433
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 20.18
Transitions / transversions = 2.25 (9/4)
Gap_init rate = 0.01 (1 / 74), avg. gap size = 6.00 (6 / 1)
+ 362 27.1 2.5 0.8 etv6flanking 22912 23030 (39232) C Copia4-I_DR LTR/Copia (122) 4085 3965 44 *
ANNOTATION EVIDENCE:
362 27.12 2.52 0.83 etv6flanking 22912 23030 39232 C Copia4-I_DR LTR/Copia 3965 4085 122
362 27.12 2.52 0.83 etv6flanking 22912 23030 (39232) C Copia4-I_DR#LTR/Copia (122) 4085 3965 m_b1s001i26
etv6flanking 22912 AAACCTCTTCAGTTTCAACTTAGTTACAGGTTTGGTCATTACATCAGCAA 22961
i vi vi v i v v ? i
C Copia4-I_DR#L 4085 AAACCTCTTTAGTTTCTGCTTAGTGGCTGGCTTCGTCATGACATCNGCGA 4036
etv6flanking 22962 TCATGTTATCGGTAGAACAATACATCAAAATCACCCTTCCCTCAATCCCA 23011
? ii i ? i ivi i ii ii v v iv iv i
C Copia4-I_DR#L 4035 TCATNTCGTCAGTNGGACAATATTCCAAGATTGCTTTACCATCGTTTACG 3986
etv6flanking 23012 GTTAACCT---GAAATCAATAC 23030
vv --- -i
C Copia4-I_DR#L 3985 GTTTCCCTTACGAAAT-GATAC 3965
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 30.39
Transitions / transversions = 1.67 (20/12)
Gap_init rate = 0.02 (2 / 118), avg. gap size = 2.00 (4 / 2)
+ 1235 27.2 3.8 1.1 etv6flanking 23021 23469 (38793) C Copia4-I_DR LTR/Copia (924) 3283 2823 44
ANNOTATION EVIDENCE:
1235 27.24 3.79 1.08 etv6flanking 23021 23469 38793 C Copia4-I_DR LTR/Copia 2823 3283 924
1235 27.24 3.79 1.08 etv6flanking 23021 23469 (38793) C Copia4-I_DR#LTR/Copia (924) 3283 2823 m_b1s001i27
etv6flanking 23021 AAATCAATACCCAGATTTTTTTTGAGTTTGCCTAAATCTTTCTTTTTAAA 23070
v ivvv v v i i v i vi v i
C Copia4-I_DR#L 3283 AAATCTATACCCAGGAAATGTTTCAATCTTCCCATGTCTTTCATTTTGAA 3234
etv6flanking 23071 CTTTTCTGCGAGCATCTCTTTCAC-CTCTTTCAGTCTCTCTTCATTGCTT 23119
i i v i i - i - vv vii i v
C Copia4-I_DR#L 3233 CCTCTCAGTGAGCATCCCTTTCACACTCTCT-AGAATGCTTTCACTGCTA 3185
etv6flanking 23120 GCTGCAATGATCAAGTCATCGACCCATATGATTATGATCACTTTCCC-TT 23168
v v i i v ii v i i -
C Copia4-I_DR#L 3184 GCTGCTATTATTAGGTCATCCACCCATACAATTAGGATTACTTTCTCATT 3135
etv6flanking 23169 ---CTTTTGACTCTTTGGCATAAACACAGTGGTCGGATGGGTTTTGTGTG 23215
--- -- v -- i v vi i v i ii i
C Copia4-I_DR#L 3134 GGGCTTTT--CTCGT--GTATATACACAGTTATCAGCTGGATTTTGCATA 3089
etv6flanking 23216 AATCCATCCTCAGTAAGGCAATTGTGCAAAACTCTATTCCAATTTGGTCC 23265
i i v ii v ii? i v vvi i vvv
C Copia4-I_DR#L 3088 AACCCATTCTCAGTCAAACATTCANGTAATACAGCATTCCAGTTTCTGCC 3039
etv6flanking 23266 GGACTGTTTAAGACCGTAAAGGGATTTCTCTAGCTTATA---AAC--TAT 23310
? i i ? i ? ?i ?i --- -- v
C Copia4-I_DR#L 3038 NGACTGCTTGAGNCCATAAAGNGATTNTTCTAGCTTNCATACAACCTTTT 2989
etv6flanking 23311 ACCCTCTTTTT-------CTTCATAACCCTCTGGTGGATTGATGTAGATC 23353
v? ? i------- i ?i ivvv iv v i ?i
C Copia4-I_DR#L 2988 CNCCTNTTTTCGATTTTACCTCATAACNTTCTGGCTTTTCTATGAAAANT 2939
etv6flanking 23354 TCATAATCTATGGGAGCGTGCAAGTACGCAGTTTTCACGTCCATTTGGTG 23403
i v v v i i i i v i i i v v
C Copia4-I_DR#L 2938 TCACACTCTATTGGTGCATGTAAATATGCTGCTTTTACATCCATGTCGTG 2889
etv6flanking 23404 GAGGAGTAAATTCTCCTGTGCAGCTTATTGTAGCACCACCCTTACACTCG 23453
i vi vi ii i ?i i i ???v i vi v i v
C Copia4-I_DR#L 2888 AACAATCAGGTTTTCNCGCGCGGNNNTTTGCATTAACACTCTTACACTAG 2839
etv6flanking 23454 TCATGTCTGCCGTGGG 23469
iv v v
C Copia4-I_DR#L 2838 TCATGTTAGCAGTTGG 2823
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 34.60
Transitions / transversions = 1.33 (69/52)
Gap_init rate = 0.02 (11 / 448), avg. gap size = 2.00 (22 / 11)
+ 350 26.2 1.0 1.0 etv6flanking 23472 23575 (38687) + DNA-8-22_DR DNA/hAT-Ac 1 104 (1330) 45
ANNOTATION EVIDENCE:
350 26.21 0.96 0.96 etv6flanking 23472 23575 38687 + DNA-8-22_DR DNA/hAT-Ac 1 104 1330
350 26.21 0.96 0.96 etv6flanking 23472 23575 (38687) DNA-8-22_DR#DNA/hAT-Ac 1 104 (1330) m_b1s001i28
etv6flanking 23472 GGGTTGGGTACCGGAAACCGGTGCTAATGTGGCACCGGTTCCAATACATC 23521
i v i v i i v vv ii v
DNA-8-22_DR#D 1 GGGTTGGGTACCGAAACCCGGTGCCATTATAGCACCGGTACCTTTGTAAC 50
etv6flanking 23522 CGGTAT-TACCCGGATCGAAACGCAACGCGCATTTCAGTCCTTCTTTCCG 23570
- - i v ivv iii v i v i vv i
DNA-8-22_DR#D 51 CGGTATGTA-CCGGACCGAATCAGCATATGAATTTCGGTGCCTAATTTCG 99
etv6flanking 23571 GTGCC 23575
DNA-8-22_DR#D 100 GTGCC 104
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 31.22
Transitions / transversions = 1.08 (14/13)
Gap_init rate = 0.02 (2 / 103), avg. gap size = 1.00 (2 / 2)
+ 268 8.1 0.0 0.0 etv6flanking 24520 24556 (37706) C DNA-8-22_DR DNA/hAT? (497) 937 904 38
ANNOTATION EVIDENCE:
268 8.11 0.00 0.00 etv6flanking 24520 24556 37706 + hAT-N31_DR DNA/hAT-Ac 1 37 1425
268 8.11 0.00 0.00 etv6flanking 24520 24556 (37706) hAT-N31_DR#DNA/hAT-Ac 1 37 (1425) m_b1s001i29
etv6flanking 24520 TAGGGATGGGTATCGTTTGGGTTTTTTCCGATACCAG 24556
v i i
hAT-N31_DR#DN 1 TAGGGTTGGGTATCGTTTGGGTTTTTTTCGATACCGG 37
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 5.91
Transitions / transversions = 2.00 (2/1)
Gap_init rate = 0.00 (0 / 36), avg. gap size = 0.0 (0 / 0)
+ 12 11.1 3.2 3.2 etv6flanking 24863 24893 (37369) + (CCTGCT)n Simple_repeat 1 31 (0) 46
ANNOTATION EVIDENCE:
12 11.09 3.23 3.23 etv6flanking 24863 24893 37369 + (CCTGCT)n Simple_repeat 1 31 0
12 11.09 3.23 3.23 etv6flanking 24863 24893 (37369) (CCTGCT)n#Simple_repeat 1 31 (0) m_b1s252i15
etv6flanking 24863 CCTGCTGCTGCCCCTGCTCTCTCCTCCT-CTC 24893
v i - v -
(CCTGCT)n#Sim 1 CCTGCTCCTGCTCCTGCTC-CTGCTCCTGCTC 31
Matrix = Unknown
Transitions / transversions = 0.50 (1/2)
Gap_init rate = 0.07 (2 / 30), avg. gap size = 1.00 (2 / 2)
+ 18 16.1 7.1 0.0 etv6flanking 25415 25456 (36806) + (TC)n Simple_repeat 1 45 (0) 47
ANNOTATION EVIDENCE:
18 16.12 7.14 0.00 etv6flanking 25415 25456 36806 + (TC)n Simple_repeat 1 45 0
18 16.12 7.14 0.00 etv6flanking 25415 25456 (36806) (TC)n#Simple_repeat 1 45 (0) m_b1s252i16
etv6flanking 25415 TCTCTC-CTCACTCTC-CTAACTCTC-CTAACTATCTCTCTCTCT 25456
- v - vv - vv v
(TC)n#Simple_ 1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 45
Matrix = Unknown
Transitions / transversions = 0.00 (0/6)
Gap_init rate = 0.07 (3 / 41), avg. gap size = 1.00 (3 / 3)
+ 98 33.0 0.3 0.3 etv6flanking 25731 26063 (36199) + (GCC)n Simple_repeat 1 333 (0) 48
ANNOTATION EVIDENCE:
98 32.95 0.30 0.30 etv6flanking 25731 26063 36199 + (GCC)n Simple_repeat 1 333 0
98 32.95 0.30 0.30 etv6flanking 25731 26063 (36199) (GCC)n#Simple_repeat 1 333 (0) m_b1s252i17
etv6flanking 25731 GCCGCTGCAACCCCCGCC-CAGAGAGCCGCTGCCACCACCGCTGCCGCCG 25779
i vi v - v -vv i i i i
(GCC)n#Simple 1 GCCGCCGCCGCCGCCGCCGCCG-CCGCCGCCGCCGCCGCCGCCGCCGCCG 49
etv6flanking 25780 CCGCCGCCGCCGCTGCCGGCAACGCTGCAGCCGCATCCACCACCGCCAAC 25829
i v iv i v vv i i iv
(GCC)n#Simple 50 CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC 99
etv6flanking 25830 AACGCCGCCAAAGTCTCTGCCGCCGCCGCTGCCACCGCCGCTGCCGCTGT 25879
iv ivv i v i i i i i i
(GCC)n#Simple 100 GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC 149
etv6flanking 25880 CGTCGCCGCCAAAAAGGCTGCCACCGCCGTTGCCCCCAACACCGGGGCCA 25929
i ivvivv i i ii v iv i vv i
(GCC)n#Simple 150 CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG 199
etv6flanking 25930 TCACCGCCGCCGCCGCTGCCTCTACCACCGCCGACGCCGCCGCCAAAGCC 25979
i i i v ii i v ivv
(GCC)n#Simple 200 CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC 249
etv6flanking 25980 GCCAAAGCCGCCGCCGCCACCGCTGCCACCAAAGCCGCCGCAGCCGCTGT 26029
ivv i i i ivv v i i
(GCC)n#Simple 250 GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC 299
etv6flanking 26030 GACCTCCAAGGCCGCCGCGGCTGCCCTCGCCGCC 26063
vi v ivv v i vi
(GCC)n#Simple 300 CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC 333
Matrix = Unknown
Transitions / transversions = 1.29 (49/38)
Gap_init rate = 0.01 (2 / 332), avg. gap size = 1.00 (2 / 2)
+ 13 16.8 0.0 0.0 etv6flanking 26146 26172 (36090) + (TAT)n Simple_repeat 1 27 (0) 49
ANNOTATION EVIDENCE:
13 16.80 0.00 0.00 etv6flanking 26146 26172 36090 + (TAT)n Simple_repeat 1 27 0
13 16.80 0.00 0.00 etv6flanking 26146 26172 (36090) (TAT)n#Simple_repeat 1 27 (0) m_b1s252i18
etv6flanking 26146 TATTATGATTATAATTCATATTATTAT 26172
v v vv
(TAT)n#Simple 1 TATTATTATTATTATTATTATTATTAT 27
Matrix = Unknown
Transitions / transversions = 0.00 (0/4)
Gap_init rate = 0.00 (0 / 26), avg. gap size = 0.0 (0 / 0)
+ 35 0.0 0.0 0.0 etv6flanking 26417 26446 (35816) + (AT)n Simple_repeat 1 30 (0) 50
ANNOTATION EVIDENCE:
35 0.00 0.00 0.00 etv6flanking 26417 26446 35816 + (AT)n Simple_repeat 1 30 0
35 0.00 0.00 0.00 etv6flanking 26417 26446 (35816) (AT)n#Simple_repeat 1 30 (0) c_b1s251i7
etv6flanking 26417 ATATATATATATATATATATATATATATAT 26446
(AT)n#Simple_ 1 ATATATATATATATATATATATATATATAT 30
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 29), avg. gap size = 0.0 (0 / 0)
+ 392 18.1 10.4 7.0 etv6flanking 26453 26577 (35685) C DNA-8-23_DR DNA/hAT (298) 513 385 51
ANNOTATION EVIDENCE:
392 18.06 10.40 6.98 etv6flanking 26453 26577 35685 C DNA-8-23_DR DNA/hAT 385 513 298
392 18.06 10.40 6.98 etv6flanking 26453 26577 (35685) C DNA-8-23_DR#DNA/hAT (298) 513 385 m_b1s001i30
etv6flanking 26453 GTGACGTGCGGTGAGGTTCAAGGTTGGTGAGGCTCTGACTCCTCTAGTGT 26502
iiv i v i ii iv
C DNA-8-23_DR#D 513 GTGACGTGCGGTGAGGTTTGTGGCTGGTGAGGCACTGACTCTTTCAAAGT 464
etv6flanking 26503 CAGATTT------ACAAATATATAAACCCAAAAGGGGCGTATT---CAAC 26543
------ i vv i v ------ ---
C DNA-8-23_DR#D 463 CAGATTTNCGNNNACAAACATATCCACTCAATA------TATTTGCCAAC 420
etv6flanking 26544 TGGTACTGGT--TATTTCATGTCTCATCT--GCATTCT 26577
--- i i -- i i v v -- ?
C DNA-8-23_DR#D 419 ---TACCGATTGTGTTTCATATATCATATCAGCATTNT 385
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 20.17
Transitions / transversions = 1.62 (13/8)
Gap_init rate = 0.10 (13 / 124), avg. gap size = 1.69 (22 / 13)
+ 67 0.0 0.0 0.0 etv6flanking 27136 27194 (35068) + (ATA)n Simple_repeat 1 59 (0) 52
ANNOTATION EVIDENCE:
67 0.00 0.00 0.00 etv6flanking 27136 27194 35068 + (ATA)n Simple_repeat 1 59 0
67 0.00 0.00 0.00 etv6flanking 27136 27194 (35068) (ATA)n#Simple_repeat 1 59 (0) c_b1s251i8
etv6flanking 27136 ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT 27185
(ATA)n#Simple 1 ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT 50
etv6flanking 27186 AATAATAAT 27194
(ATA)n#Simple 51 AATAATAAT 59
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 58), avg. gap size = 0.0 (0 / 0)
+ 355 28.3 0.0 0.0 etv6flanking 27238 27336 (34926) C Copia1-I_DR LTR/Copia (122) 4085 3987 53
ANNOTATION EVIDENCE:
355 28.28 0.00 0.00 etv6flanking 27238 27336 34926 C Copia4-I_DR LTR/Copia 3987 4085 122
355 28.28 0.00 0.00 etv6flanking 27238 27336 (34926) C Copia4-I_DR#LTR/Copia (122) 4085 3987 m_b1s001i31
etv6flanking 27238 AAACCTCTTCAGTTTCAACTTAGTTACAGGTTTGGTCATTACATCAACGA 27287
i vi vi v i v v ?i
C Copia4-I_DR#L 4085 AAACCTCTTTAGTTTCTGCTTAGTGGCTGGCTTCGTCATGACATCNGCGA 4036
etv6flanking 27288 TCATGTTATCGGTAAAACAATACATCAAAATCACCCTTCCCTCAGTCAC 27336
? ii i ?ii ivi i ii ii v v iv i
C Copia4-I_DR#L 4035 TCATNTCGTCAGTNGGACAATATTCCAAGATTGCTTTACCATCGTTTAC 3987
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 35.08
Transitions / transversions = 2.11 (19/9)
Gap_init rate = 0.00 (0 / 98), avg. gap size = 0.0 (0 / 0)
+ 1104 25.5 5.5 2.1 etv6flanking 27340 27703 (34559) C Copia1-I_DR LTR/Copia (906) 3151 2776 53
ANNOTATION EVIDENCE:
1104 25.54 5.49 2.13 etv6flanking 27340 27703 34559 C Copia1-I_DR LTR/Copia 2776 3151 906
1104 25.54 5.49 2.13 etv6flanking 27340 27703 (34559) C Copia1-I_DR#LTR/Copia (906) 3151 2776 m_b1s001i32
etv6flanking 27340 TGAGTTTGCCTAAATCTTTCATTTTAAACTTTTCTGCGAGCATCTCTTTC 27389
i v i i i i vv iv i
C Copia1-I_DR#L 3151 TGAGCTTTCCCAGATCTTTCATTTTGAATTTTGATGTCAGCATTTCTTTC 3102
etv6flanking 27390 ACCTCTTTCAGT---CTCTCTTCATTGCTTGCTGCAATGATCAAGTCATC 27436
v i --- v iv --- v v v v ii
C Copia1-I_DR#L 3101 ACATCCTTCAGTAAACTGTTGTCA---CTAGCAGCTATGATGAGATCATC 3055
etv6flanking 27437 GAGCCATATGATTATGATCACTTTCCCTTCTTTTGACTCTTTGGC----- 27481
v v v v --- iv -- ivi v -----
C Copia1-I_DR#L 3054 TACCCAGATTATTATGATCAC---CCTGTCTTT--ACCACTTCGCTTACT 3010
etv6flanking 27482 ATAAACACAGTGGTCGGATGGGTTTTGTGTGAATCCATTCTCAGTAAGGC 27531
i v ii i vii i i i vi i i ii
C Copia1-I_DR#L 3009 GTACACACAGTAATCAGCCAGATTCTGTATGAAATCATTTTCAGTGAGAT 2960
etv6flanking 27532 AATTGTGCAAAACCCTATTCCAATTTCGACCGGACTGTTTAAGACCGTAA 27581
vvii i v iii i ?v v i v i i v
C Copia1-I_DR#L 2959 ACACATGTAACATTTTGTTCCAATTTCNTCCTGATTGTTTTAAACCATAC 2910
etv6flanking 27582 AGTGATTTATTTAGCTTATAAACTA---TAC--CCTCTTTTT--TTTCAT 27624
i i ii i i --- i-- v -- v i
C Copia1-I_DR#L 2909 AGTGATTTGTTCAATTTACAGACTAGTTTATCACCTCTGTTTGATTTGAC 2860
etv6flanking 27625 ----AACCCTCT-GGTGGATTGATGTAGATCTCATAATCTATGGGAGCGT 27669
---- i i - iv v iv i i v
C Copia1-I_DR#L 2859 CTCAAATCCTTTCGGCTGCTCCATGTAAATCTCACAATCTATTGGAGCGT 2810
etv6flanking 27670 GCAAGTACGCAGTTTTCACGTCCATTTGGTGGAG 27703
i v v i i
C Copia1-I_DR#L 2809 GTAAGTAAGCCGTTTTCACATCCATTTGGTGAAG 2776
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 32.16
Transitions / transversions = 1.53 (55/36)
Gap_init rate = 0.04 (15 / 363), avg. gap size = 1.87 (28 / 15)
+ 310 26.1 0.0 0.0 etv6flanking 28052 28120 (34142) C hAT-N94_DR DNA/hAT-Charlie (513) 558 490 54
ANNOTATION EVIDENCE:
310 26.09 0.00 0.00 etv6flanking 28052 28120 34142 C hAT-N94_DR DNA/hAT-Charlie 490 558 513
310 26.09 0.00 0.00 etv6flanking 28052 28120 (34142) C hAT-N94_DR#DNA/hAT-Charlie (513) 558 490 m_b1s001i33
etv6flanking 28052 GTGGGTATGTTTGTTCAAAACCTTTATGTTTTGTCTCATAACGGCGTTTC 28101
i ivvii iv iii i i ii
C hAT-N94_DR#DN 558 GTGGATACTGCCGTTCAAAATGTCCGTGTTTCGTTTCATAGTGGCGTTTC 509
etv6flanking 28102 ACATTTCCACTTTTAATAA 28120
i v i
C hAT-N94_DR#DN 508 ACATTTCCACTCTTTACAA 490
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 27.19
Transitions / transversions = 3.50 (14/4)
Gap_init rate = 0.00 (0 / 68), avg. gap size = 0.0 (0 / 0)
+ 489 23.6 6.5 9.9 etv6flanking 28594 28605 (33657) C Gypsy98-LTR_Dr LTR/Gypsy (793) 991 858 55
ANNOTATION EVIDENCE:
399 24.47 10.06 4.03 etv6flanking 28594 28921 33341 C Gypsy98-LTR_Dr LTR/Gypsy 596 942 842
399 24.47 10.06 4.03 etv6flanking 28594 28921 (33341) C Gypsy98-LTR_Dr#LTR/Gypsy (842) 942 596 m_b1s001i34
etv6flanking 28594 GAGCGGGT----GCTGGTAGTAGTGGATAGCA-TG--TGTATCAGAAGTA 28636
i ---- i i ? ii v - i-- v v -
C Gypsy98-LTR_D 942 GAGCAGGTAACAGTTAGTNGTAGCAGTTAGCAGTAACTGTAACAGTAG-A 894
etv6flanking 28637 GTGGATAGCATGTGTATCAGCAGTAGTGGATAGCATGTGTATCAG-TAGT 28685
i -i v iiv - i i --- v -
C Gypsy98-LTR_D 893 GTAG-CAGCAGGCAGAT-AGTAGTAGCGGATAGCA---GTAGCAGCTAGT 849
etv6flanking 28686 AGTG--TGTAGCAT---GTGTATCAGTAGTAGTGTGTAGCA-TGTGTATC 28729
i--? v---? v i vvv i -i v v
C Gypsy98-LTR_D 848 AGTAACNGTAGCAGTAANTGTAGCAGTAGCAGATAGTAGTAACGGGTAGC 799
etv6flanking 28730 AGCAGTAGTGGATAGCATGTGTATCAGTAGTAGTGTA-TAGCATGTGTAT 28778
i i vii i vv v i-- ? -i - iiv
C Gypsy98-LTR_D 798 AGTAGCAGTTAGTAGTAACTGTAGCAGTG--ANTGTAGCAGCA-GCAGAT 752
etv6flanking 28779 CAGTAGTAGTGGATAGCATGTGTATCAG-TAGTAGTGG--ATAGCA-TGT 28824
- i i --- v - ii--i - v
C Gypsy98-LTR_D 751 -AGTAGTAGCGGGTAGCA---GTAGCAGCTAGTAGTAACTGTAGCAGTGA 706
etv6flanking 28825 GTATCAGTAGTAGTGGATAGCA----TGTGTATCAGCAGTAGTGGATAGC 28870
? i - i ii i ----i v v i i vii i
C Gypsy98-LTR_D 705 NTGT-AGCAGTAGCAGATAGTAGTAGCGGGTAGCAGTAGCAGTTAGTAGT 657
etv6flanking 28871 ATGTGTATCAGTA---------GTAGTGGATAGCATGTGTAT-CAGCAGT 28910
vv v --------- ii i v?v i v-
C Gypsy98-LTR_D 656 AACTGTAGCAGTAAATGTAGCAGTAGCAGATAGTAGNAGCAGGCAGCAGT 607
etv6flanking 28911 AGTGGATAGCA 28921
ii i
C Gypsy98-LTR_D 606 AGTAAACAGCA 596
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 29.32
Transitions / transversions = 1.66 (48/29)
Gap_init rate = 0.09 (28 / 327), avg. gap size = 1.68 (47 / 28)
418 24.07 4.80 10.35 etv6flanking 28655 29071 33191 C Gypsy98-LTR_Dr LTR/Gypsy 596 991 793
418 24.07 4.80 10.35 etv6flanking 28655 29071 (33191) C Gypsy98-LTR_Dr#LTR/Gypsy (793) 991 596 m_b1s001i36
etv6flanking 28655 AGCAGTAGTGGATAGCATGTGTATCAGTAGTAGTGTGTAGCATGTGTATC 28704
?i i --- v -- v i- --- i v
C Gypsy98-LTR_D 991 AGCAGTAGNAGATAGTA---GTAGCAG--GTCGTA-GTAGCA---GCAGC 951
etv6flanking 28705 AGT-AGTAGTGT--GTAGCATGTGTATCAGCAGTAGTGGATAGCATGTGT 28751
- i v i-- i - - vi? i i viii i vv
C Gypsy98-LTR_D 950 AGTAAATAGAGCAGGTAACA-GT-TAGTNGTAGCAGTTAGCAGTAACTGT 903
etv6flanking 28752 ATCAGTAGTAGTGTATAGCATGTGTATCAGTAGTAGTGGATAGCATGTGT 28801
v - i-ii v iiv - i ---
C Gypsy98-LTR_D 902 AACAGTAG-AGTA-GCAGCAGGCAGAT-AGTAGTAGCGGATAGCA---GT 859
etv6flanking 28802 ATCAG-TAGTAGTG--GATAGCA-TGTGTATCAGTAGTAGTGGATAGCAT 28847
v - i--?i - iv? i - i ii i -
C Gypsy98-LTR_D 858 AGCAGCTAGTAGTAACNGTAGCAGTAANTGT-AGCAGTAGCAGATAGTA- 811
etv6flanking 28848 GTGTATC----AGCAGTAGTGGATAGCATGTGTATCAGTAGTAGTGGATA 28893
-- v ---- ii v i --- v v i i? -
C Gypsy98-LTR_D 810 --GTAACGGGTAGCAGTAGCAGTTAGTA---GTAACTGTAGCAGTGANT- 767
etv6flanking 28894 GCATGTGTATCAGCAG-TAGTGGATAGCATGTGTATCAGTAGTAGTGGAT 28942
i --- i v - i - -- v v i ivii
C Gypsy98-LTR_D 766 GTA---GCAGCAGCAGATAGTAG-TAGC--GGGTAGCAGTAGCAGCTAGT 723
etv6flanking 28943 AGCATGTGTATCAGTA---GTAGTGGATAGCATGTGTATCAGTAGTAGTG 28989
i vv v i--- ii - vi ----- i
C Gypsy98-LTR_D 722 AGTAACTGTAGCAGTGANTGTAGCAG-TAGCAGAT-----AGTAGTAGCG 679
etv6flanking 28990 GATAGCATGTGTATCAG-TAGTAGTGG--ATAGCATGTGTAT-CAGCAGT 29035
i --- v - ii--i - iv -i
C Gypsy98-LTR_D 678 GGTAGCA---GTAGCAGTTAGTAGTAACTGTAGCA-GTAAATGTAGCAGT 633
etv6flanking 29036 AGTGGATAGCATGTGTA-TCAGTAGTAGTGGATAGCA 29071
ii i v?v i -v i ii i
C Gypsy98-LTR_D 632 AGCAGATAGTAGNAGCAGGCAGCAGTAGTAAACAGCA 596
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 29.61
Transitions / transversions = 2.00 (60/30)
Gap_init rate = 0.13 (53 / 416), avg. gap size = 1.15 (61 / 53)
489 23.41 6.78 9.98 etv6flanking 28730 29142 33120 C Gypsy98-LTR_Dr LTR/Gypsy 591 991 793
489 23.41 6.78 9.98 etv6flanking 28730 29142 (33120) C Gypsy98-LTR_Dr#LTR/Gypsy (793) 991 591 m_b1s001i38
etv6flanking 28730 AGCAGTAGTGGATAGCATGTGTATCAGTAGTAGTGTATAGCATGTGTATC 28779
?i i --- v -- --i -------- v
C Gypsy98-LTR_D 991 AGCAGTAGNAGATAGTA---GTAGCAG--GT--CGTA--------GTAGC 957
etv6flanking 28780 AGTAGTAGTGGATAGCATGTGTA----TCAGTAGTAGTGGATAGCA-TG- 28823
i i ii viiiv ---- i ? ii v - i-
C Gypsy98-LTR_D 956 AGCAGCAGTAAATAGAGCAGGTAACAGTTAGTNGTAGCAGTTAGCAGTAA 907
etv6flanking 28824 -TGTATCAGTAGTAGTGGATAGCATGTGTATCAGCAGTAGTGGATAGCAT 28872
- v - i -i v iiv - i i -
C Gypsy98-LTR_D 906 CTGTAACAGTAG-AGTAG-CAGCAGGCAGAT-AGTAGTAGCGGATAGCA- 861
etv6flanking 28873 GTGTATCAG-TAGTAGTG--GATAGCA-TGTGTATCAGCAGTAGTGGATA 28918
-- v - i--?i - iv? i - ii
C Gypsy98-LTR_D 860 --GTAGCAGCTAGTAGTAACNGTAGCAGTAANTGT-AGCAGTAGCAGATA 814
etv6flanking 28919 GC----ATGTGTATCAGTAGTAGTGGATAGCATGTGTATCAGTAGTAGTG 28964
i---- i v v i vii i vv v ii?v i
C Gypsy98-LTR_D 813 GTAGTAACGGGTAGCAGTAGCAGTTAGTAGTAACTGTAGCAGTGANTGTA 764
etv6flanking 28965 GATAGCATGTGTATCAGTAGTAGTGGATAGCATGTGTATCAG-TAGTAGT 29013
-i - iiv - i i --- v -
C Gypsy98-LTR_D 763 G-CAGCA-GCAGAT-AGTAGTAGCGGGTAGCA---GTAGCAGCTAGTAGT 720
etv6flanking 29014 GG--ATAGCA-TGTGTATCAGCAGTAGTGGATAGCA----TGTGTATCAG 29056
ii--i - v? i - ii i ----i v v
C Gypsy98-LTR_D 719 AACTGTAGCAGTGANTGT-AGCAGTAGCAGATAGTAGTAGCGGGTAGCAG 671
etv6flanking 29057 TAGTAGTGGATAGCATGTGTATCAGTAGTAGTGGATAGCATGTGTATCAG 29106
i vii i vv v -- i -- --- v
C Gypsy98-LTR_D 670 TAGCAGTTAGTAGTAACTGTAGCAGTA--AATG--TAGCA---GTAGCAG 628
etv6flanking 29107 -TAGTAGTGTGTAGCATGCCGCA----CAAACAACAACAAT 29142
- ---- ? v v ----i i ii i
C Gypsy98-LTR_D 627 ATAGTA----GNAGCAGGCAGCAGTAGTAAACAGCAGTAGT 591
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 27.54
Transitions / transversions = 2.00 (58/29)
Gap_init rate = 0.13 (54 / 412), avg. gap size = 1.26 (68 / 54)
+ 340 21.6 8.6 10.1 etv6flanking 28606 28965 (33297) + L1-11_DR LINE/L1 6568 6922 (402) 56
ANNOTATION EVIDENCE:
340 21.63 8.61 10.14 etv6flanking 28606 28965 33297 + L1-11_DR LINE/L1 6568 6922 402
340 21.63 8.61 10.14 etv6flanking 28606 28965 (33297) L1-11_DR#LINE/L1 6568 6922 (402) m_b1s001i35
etv6flanking 28606 GTAGTAGTGGATAGCATGTGTATCAGAAGTAGTGGATAGCATGTGTATCA 28655
i iv i vv - v ii - i --- v?i
L1-11_DR#LINE 6568 GTAGTAGTAGATGTCGTTGGTAT-AGTAGTAGCAGA-AGTA---GTAANG 6612
etv6flanking 28656 GCAGTAGTGGATAGCATGTGTATCAGTAGTAGT--------GTGTAGCAT 28697
i- ? ? v - --- vi -------- i -
L1-11_DR#LINE 6613 GT-GTNGTNGTT-GCA---GTAGTAGTAGTAGTCGTTGTTGGTGTAGTA- 6656
etv6flanking 28698 GTGTATCAGTAGTAG-TGT-GTAGCATGTGTAT-CAGCAGTAGTGGATAG 28744
-- - - v - iv -i i ? -----
L1-11_DR#LINE 6657 --GTATCAGTAGTAGATGTTGTTG-ATGTAGATGTAGTAGNAGTG----- 6698
etv6flanking 28745 CATGTGTATCAGTAGTAGTGTATAGCATGTGTATCAGTAGTAGTGGATAG 28794
- - vi i-i i --- vi i -
L1-11_DR#LINE 6699 -AT-TGTAGTAGTAGTAGTA-GTAGTA---GTAGTAGTAGTAGTAG-TAG 6741
etv6flanking 28795 CATGTGTATCAGTAGTAGTGGATAGCATGTGTATCAGTAGTAGTGGATAG 28844
i --- vi i iivii - i v ii i-
L1-11_DR#LINE 6742 TA---GTAGTAGTAGTAGTAGACGTTGT-TGTATTAGTTGTAGCAGAC-G 6786
etv6flanking 28845 CATGT----GTATCAGCAGTAGTGG-----ATAGCATGTGTATCAGTAGT 28885
- ---- i i i -----i i --- ?
L1-11_DR#LINE 6787 C-TGTAGTAGTATCAGTAGTGGTAGTCGTTGTAGTA---GTATCAGTANT 6832
etv6flanking 28886 AGTGGATAGCAT-GT-GTATCAGCAGTAGTGG--ATAGCATGT-GTATCA 28930
i i vii - - vi i v --i i - - v?
L1-11_DR#LINE 6833 AGTAGACATTGTAGTAGTAGTAGTAGTCGTGGTTGTGGC-TGTAGTAGNA 6881
etv6flanking 28931 GTAGTAGTGG--ATAGCATGTGTA----TCAGTAGTAGTGG 28965
i i --i ii iv ---- v i
L1-11_DR#LINE 6882 GCAGTAGTAGTTGTAATATAAGTAACTTTCTGTAGTAGTAG 6922
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 25.66
Transitions / transversions = 2.50 (50/20)
Gap_init rate = 0.13 (48 / 359), avg. gap size = 1.40 (67 / 48)
+ 340 21.9 10.7 7.6 etv6flanking 28674 29122 (33140) + L1-11_DR LINE/L1 6439 6900 (424) 57
ANNOTATION EVIDENCE:
340 21.93 10.69 7.58 etv6flanking 28674 29122 33140 + L1-11_DR LINE/L1 6439 6900 424
340 21.93 10.69 7.58 etv6flanking 28674 29122 (33140) L1-11_DR#LINE/L1 6439 6900 (424) m_b1s001i37
etv6flanking 28674 TGTATCAGTAGTAGTGTGTAGCATGT-GTATCAGTAGTAGTGTGTAGCAT 28722
v i - i - - vi i- i v
L1-11_DR#LINE 6439 TGTAGCGGTAGTAGT-TGTAGTA-GTAGTAGTAGTAGTAGTA-GTAGTAG 6485
etv6flanking 28723 GTGTATCAGCAGTAGTGGATAGCAT-GT-GTATC-----------AGTAG 28759
v viv ? i ?i ?ii - - -----------
L1-11_DR#LINE 6486 TTGTAGTTGNAGTAGTAGNCANTGTAGTAGTATCGATTGTTNTTGAGTAG 6535
etv6flanking 28760 TAGTGTATAGCA--TGT-------GTA--TCA-GTAGTAGTGGATAGCAT 28797
v - ii vi-- ? ------- -- ?- i iv i
L1-11_DR#LINE 6536 TTGT-TACGGAGATTNTTGAAGTAGTAGTTCNTGTAGTAGTAGATGTCGT 6584
etv6flanking 28798 GTGTATCAGTAGTAGTGGATAGCATGTGTATCAGTAGTAGTGGATAGCAT 28847
vv - ii - i --- v?i - ? ? v - -
L1-11_DR#LINE 6585 TGGTAT-AGTAGTAGCAGA-AGTA---GTAANGGT-GTNGTNGTT-GCA- 6626
etv6flanking 28848 GT-GTATCAGCAGTAGTGGATAGCAT-GT-GTATCAGTAGTAGTGGATAG 28894
- vi i v v v i ii - - vv v iv
L1-11_DR#LINE 6627 GTAGTAGTAGTAGTCGTTGTTGGTGTAGTAGTATCAGTAGTAGATGTTGT 6676
etv6flanking 28895 C-ATGTGTAT-CAGCAGTAGTGGATAGCATGTGTATCAGTAGTAGTGGAT 28942
i- iv -i i ? ------ - vi i -
L1-11_DR#LINE 6677 TGATGTAGATGTAGTAGNAGTG------AT-TGTAGTAGTAGTAGTAG-T 6718
etv6flanking 28943 AGCATGTGTATCAGTAGTAGTGGATAGCATGTGTATCAGTAGTAGTGGAT 28992
i --- vi i - i --- vi i i
L1-11_DR#LINE 6719 AGTA---GTAGTAGTAGTAGTAG-TAGTA---GTAGTAGTAGTAGTAGAC 6761
etv6flanking 28993 AGCATGTGTATCAGTAGTAGTGGATAGCATGT----GTATCAGCAGTAGT 29038
ivii - i v ii i- - ---- i i
L1-11_DR#LINE 6762 GTTGT-TGTATTAGTTGTAGCAGAC-GC-TGTAGTAGTATCAGTAGTGGT 6808
etv6flanking 29039 GG-----ATAGCATGTGTATCAGTAGTAGTGGATAGCAT-GT-GTATCAG 29081
i -----i i --- ? i i vii - - vi
L1-11_DR#LINE 6809 AGTCGTTGTAGTA---GTATCAGTANTAGTAGACATTGTAGTAGTAGTAG 6855
etv6flanking 29082 TAGTAGTGG--ATAGCATGT----GTATCAGTAGTAGTGTGTAGCAT 29122
v --i i - ---- ? v - ii
L1-11_DR#LINE 6856 TAGTCGTGGTTGTGGC-TGTAGTAGNAGCAGTAGTAGT-TGTAATAT 6900
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 25.82
Transitions / transversions = 1.94 (60/31)
Gap_init rate = 0.12 (54 / 448), avg. gap size = 1.54 (83 / 54)
+ 489 23.6 6.5 9.9 etv6flanking 29123 29142 (33120) C Gypsy98-LTR_Dr LTR/Gypsy (793) 857 591 55
ANNOTATION EVIDENCE:
399 24.47 10.06 4.03 etv6flanking 28594 28921 33341 C Gypsy98-LTR_Dr LTR/Gypsy 596 942 842
399 24.47 10.06 4.03 etv6flanking 28594 28921 (33341) C Gypsy98-LTR_Dr#LTR/Gypsy (842) 942 596 m_b1s001i34
etv6flanking 28594 GAGCGGGT----GCTGGTAGTAGTGGATAGCA-TG--TGTATCAGAAGTA 28636
i ---- i i ? ii v - i-- v v -
C Gypsy98-LTR_D 942 GAGCAGGTAACAGTTAGTNGTAGCAGTTAGCAGTAACTGTAACAGTAG-A 894
etv6flanking 28637 GTGGATAGCATGTGTATCAGCAGTAGTGGATAGCATGTGTATCAG-TAGT 28685
i -i v iiv - i i --- v -
C Gypsy98-LTR_D 893 GTAG-CAGCAGGCAGAT-AGTAGTAGCGGATAGCA---GTAGCAGCTAGT 849
etv6flanking 28686 AGTG--TGTAGCAT---GTGTATCAGTAGTAGTGTGTAGCA-TGTGTATC 28729
i--? v---? v i vvv i -i v v
C Gypsy98-LTR_D 848 AGTAACNGTAGCAGTAANTGTAGCAGTAGCAGATAGTAGTAACGGGTAGC 799
etv6flanking 28730 AGCAGTAGTGGATAGCATGTGTATCAGTAGTAGTGTA-TAGCATGTGTAT 28778
i i vii i vv v i-- ? -i - iiv
C Gypsy98-LTR_D 798 AGTAGCAGTTAGTAGTAACTGTAGCAGTG--ANTGTAGCAGCA-GCAGAT 752
etv6flanking 28779 CAGTAGTAGTGGATAGCATGTGTATCAG-TAGTAGTGG--ATAGCA-TGT 28824
- i i --- v - ii--i - v
C Gypsy98-LTR_D 751 -AGTAGTAGCGGGTAGCA---GTAGCAGCTAGTAGTAACTGTAGCAGTGA 706
etv6flanking 28825 GTATCAGTAGTAGTGGATAGCA----TGTGTATCAGCAGTAGTGGATAGC 28870
? i - i ii i ----i v v i i vii i
C Gypsy98-LTR_D 705 NTGT-AGCAGTAGCAGATAGTAGTAGCGGGTAGCAGTAGCAGTTAGTAGT 657
etv6flanking 28871 ATGTGTATCAGTA---------GTAGTGGATAGCATGTGTAT-CAGCAGT 28910
vv v --------- ii i v?v i v-
C Gypsy98-LTR_D 656 AACTGTAGCAGTAAATGTAGCAGTAGCAGATAGTAGNAGCAGGCAGCAGT 607
etv6flanking 28911 AGTGGATAGCA 28921
ii i
C Gypsy98-LTR_D 606 AGTAAACAGCA 596
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 29.32
Transitions / transversions = 1.66 (48/29)
Gap_init rate = 0.09 (28 / 327), avg. gap size = 1.68 (47 / 28)
418 24.07 4.80 10.35 etv6flanking 28655 29071 33191 C Gypsy98-LTR_Dr LTR/Gypsy 596 991 793
418 24.07 4.80 10.35 etv6flanking 28655 29071 (33191) C Gypsy98-LTR_Dr#LTR/Gypsy (793) 991 596 m_b1s001i36
etv6flanking 28655 AGCAGTAGTGGATAGCATGTGTATCAGTAGTAGTGTGTAGCATGTGTATC 28704
?i i --- v -- v i- --- i v
C Gypsy98-LTR_D 991 AGCAGTAGNAGATAGTA---GTAGCAG--GTCGTA-GTAGCA---GCAGC 951
etv6flanking 28705 AGT-AGTAGTGT--GTAGCATGTGTATCAGCAGTAGTGGATAGCATGTGT 28751
- i v i-- i - - vi? i i viii i vv
C Gypsy98-LTR_D 950 AGTAAATAGAGCAGGTAACA-GT-TAGTNGTAGCAGTTAGCAGTAACTGT 903
etv6flanking 28752 ATCAGTAGTAGTGTATAGCATGTGTATCAGTAGTAGTGGATAGCATGTGT 28801
v - i-ii v iiv - i ---
C Gypsy98-LTR_D 902 AACAGTAG-AGTA-GCAGCAGGCAGAT-AGTAGTAGCGGATAGCA---GT 859
etv6flanking 28802 ATCAG-TAGTAGTG--GATAGCA-TGTGTATCAGTAGTAGTGGATAGCAT 28847
v - i--?i - iv? i - i ii i -
C Gypsy98-LTR_D 858 AGCAGCTAGTAGTAACNGTAGCAGTAANTGT-AGCAGTAGCAGATAGTA- 811
etv6flanking 28848 GTGTATC----AGCAGTAGTGGATAGCATGTGTATCAGTAGTAGTGGATA 28893
-- v ---- ii v i --- v v i i? -
C Gypsy98-LTR_D 810 --GTAACGGGTAGCAGTAGCAGTTAGTA---GTAACTGTAGCAGTGANT- 767
etv6flanking 28894 GCATGTGTATCAGCAG-TAGTGGATAGCATGTGTATCAGTAGTAGTGGAT 28942
i --- i v - i - -- v v i ivii
C Gypsy98-LTR_D 766 GTA---GCAGCAGCAGATAGTAG-TAGC--GGGTAGCAGTAGCAGCTAGT 723
etv6flanking 28943 AGCATGTGTATCAGTA---GTAGTGGATAGCATGTGTATCAGTAGTAGTG 28989
i vv v i--- ii - vi ----- i
C Gypsy98-LTR_D 722 AGTAACTGTAGCAGTGANTGTAGCAG-TAGCAGAT-----AGTAGTAGCG 679
etv6flanking 28990 GATAGCATGTGTATCAG-TAGTAGTGG--ATAGCATGTGTAT-CAGCAGT 29035
i --- v - ii--i - iv -i
C Gypsy98-LTR_D 678 GGTAGCA---GTAGCAGTTAGTAGTAACTGTAGCA-GTAAATGTAGCAGT 633
etv6flanking 29036 AGTGGATAGCATGTGTA-TCAGTAGTAGTGGATAGCA 29071
ii i v?v i -v i ii i
C Gypsy98-LTR_D 632 AGCAGATAGTAGNAGCAGGCAGCAGTAGTAAACAGCA 596
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 29.61
Transitions / transversions = 2.00 (60/30)
Gap_init rate = 0.13 (53 / 416), avg. gap size = 1.15 (61 / 53)
489 23.41 6.78 9.98 etv6flanking 28730 29142 33120 C Gypsy98-LTR_Dr LTR/Gypsy 591 991 793
489 23.41 6.78 9.98 etv6flanking 28730 29142 (33120) C Gypsy98-LTR_Dr#LTR/Gypsy (793) 991 591 m_b1s001i38
etv6flanking 28730 AGCAGTAGTGGATAGCATGTGTATCAGTAGTAGTGTATAGCATGTGTATC 28779
?i i --- v -- --i -------- v
C Gypsy98-LTR_D 991 AGCAGTAGNAGATAGTA---GTAGCAG--GT--CGTA--------GTAGC 957
etv6flanking 28780 AGTAGTAGTGGATAGCATGTGTA----TCAGTAGTAGTGGATAGCA-TG- 28823
i i ii viiiv ---- i ? ii v - i-
C Gypsy98-LTR_D 956 AGCAGCAGTAAATAGAGCAGGTAACAGTTAGTNGTAGCAGTTAGCAGTAA 907
etv6flanking 28824 -TGTATCAGTAGTAGTGGATAGCATGTGTATCAGCAGTAGTGGATAGCAT 28872
- v - i -i v iiv - i i -
C Gypsy98-LTR_D 906 CTGTAACAGTAG-AGTAG-CAGCAGGCAGAT-AGTAGTAGCGGATAGCA- 861
etv6flanking 28873 GTGTATCAG-TAGTAGTG--GATAGCA-TGTGTATCAGCAGTAGTGGATA 28918
-- v - i--?i - iv? i - ii
C Gypsy98-LTR_D 860 --GTAGCAGCTAGTAGTAACNGTAGCAGTAANTGT-AGCAGTAGCAGATA 814
etv6flanking 28919 GC----ATGTGTATCAGTAGTAGTGGATAGCATGTGTATCAGTAGTAGTG 28964
i---- i v v i vii i vv v ii?v i
C Gypsy98-LTR_D 813 GTAGTAACGGGTAGCAGTAGCAGTTAGTAGTAACTGTAGCAGTGANTGTA 764
etv6flanking 28965 GATAGCATGTGTATCAGTAGTAGTGGATAGCATGTGTATCAG-TAGTAGT 29013
-i - iiv - i i --- v -
C Gypsy98-LTR_D 763 G-CAGCA-GCAGAT-AGTAGTAGCGGGTAGCA---GTAGCAGCTAGTAGT 720
etv6flanking 29014 GG--ATAGCA-TGTGTATCAGCAGTAGTGGATAGCA----TGTGTATCAG 29056
ii--i - v? i - ii i ----i v v
C Gypsy98-LTR_D 719 AACTGTAGCAGTGANTGT-AGCAGTAGCAGATAGTAGTAGCGGGTAGCAG 671
etv6flanking 29057 TAGTAGTGGATAGCATGTGTATCAGTAGTAGTGGATAGCATGTGTATCAG 29106
i vii i vv v -- i -- --- v
C Gypsy98-LTR_D 670 TAGCAGTTAGTAGTAACTGTAGCAGTA--AATG--TAGCA---GTAGCAG 628
etv6flanking 29107 -TAGTAGTGTGTAGCATGCCGCA----CAAACAACAACAAT 29142
- ---- ? v v ----i i ii i
C Gypsy98-LTR_D 627 ATAGTA----GNAGCAGGCAGCAGTAGTAAACAGCAGTAGT 591
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 27.54
Transitions / transversions = 2.00 (58/29)
Gap_init rate = 0.13 (54 / 412), avg. gap size = 1.26 (68 / 54)
+ 417 18.1 0.0 0.0 etv6flanking 29173 29244 (33018) C DNA8-2_DR DNA/hAT-Tip100 (4) 820 749 58
ANNOTATION EVIDENCE:
417 18.06 0.00 0.00 etv6flanking 29173 29244 33018 C DNA8-2_DR DNA/hAT-Tip100 749 820 4
417 18.06 0.00 0.00 etv6flanking 29173 29244 (33018) C DNA8-2_DR#DNA/hAT-Tip100 (4) 820 749 m_b1s001i39
etv6flanking 29173 GTTGCCAGATTGGAGATGGTGAAGTATCGTGCCAAAGGCTCAAAATGGTC 29222
i vii i i iv vi
C DNA8-2_DR#DNA 820 GTTGCCAGATTGGAAATGTCAAAGTATCGTACCAGAACCTCAAAATTATC 771
etv6flanking 29223 GTATTTGAAGGATAATCATCGT 29244
i v i
C DNA8-2_DR#DNA 770 GTATTTGGAGGAAAATTATCGT 749
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 21.18
Transitions / transversions = 2.25 (9/4)
Gap_init rate = 0.00 (0 / 71), avg. gap size = 0.0 (0 / 0)
+ 358 26.4 0.0 0.0 etv6flanking 29387 29473 (32789) + DNA-8-15_DR DNA/hAT-Ac 1321 1407 (671) 59
ANNOTATION EVIDENCE:
358 26.44 0.00 0.00 etv6flanking 29387 29473 32789 + DNA-8-15_DR DNA/hAT-Ac 1321 1407 671
358 26.44 0.00 0.00 etv6flanking 29387 29473 (32789) DNA-8-15_DR#DNA/hAT-Ac 1321 1407 (671) m_b1s001i40
etv6flanking 29387 GACGTTTTTGGAATCCCTGCCGGACACATTTTTTAGGGCTCAAAAACAGG 29436
i v v i iiv i i ii v i v i v v
DNA-8-15_DR#D 1321 GGCGATTTAGAAATCTTGGCTGAATGCAATTTTTAAGTCCCAAATAGAGG 1370
etv6flanking 29437 ATATGTCCGGGTAAAAGAGGATGCCTGGCCACCCTAA 29473
i v iv v i
DNA-8-15_DR#D 1371 ACATGTCCGGGAAAAAGAGGATGTATTGTCACCCTAA 1407
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 33.23
Transitions / transversions = 1.30 (13/10)
Gap_init rate = 0.00 (0 / 86), avg. gap size = 0.0 (0 / 0)
+ 225 6.7 0.0 0.0 etv6flanking 29879 29908 (32354) C hAT-N35B_DR DNA/hAT-Ac (585) 1027 998 60
ANNOTATION EVIDENCE:
225 6.67 0.00 0.00 etv6flanking 29879 29908 32354 C hAT-N35B_DR DNA/hAT-Ac 998 1027 585
225 6.67 0.00 0.00 etv6flanking 29879 29908 (32354) C hAT-N35B_DR#DNA/hAT-Ac (585) 1027 998 m_b1s001i41
etv6flanking 29879 TGTGAAATAGAGCCAAACTTTAGAACGCTT 29908
v v
C hAT-N35B_DR#D 1027 TGTGAAATACAGCCATACTTTAGAACGCTT 998
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 7.03
Transitions / transversions = 0.00 (0/2)
Gap_init rate = 0.00 (0 / 29), avg. gap size = 0.0 (0 / 0)
+ 354 16.2 0.0 1.4 etv6flanking 30566 30640 (31622) C hAT-N116_DR DNA/hAT-Ac (682) 503 430 61
ANNOTATION EVIDENCE:
354 16.22 0.00 1.35 etv6flanking 30566 30640 31622 C hAT-N116_DR DNA/hAT-Ac 430 503 682
354 16.22 0.00 1.35 etv6flanking 30566 30640 (31622) C hAT-N116_DR#DNA/hAT-Ac (682) 503 430 m_b1s001i42
etv6flanking 30566 GTCCGGGTCCGGATGGGACGGCCTCTGGGTCCGGACCCGGACCGCGGTCC 30615
v v - i i v v i
C hAT-N116_DR#D 503 GTCCGCGTCCGTATGGGACG-CTTCTGGGTCTGGACACGGACCTCGATCC 455
etv6flanking 30616 GCCAGTTAGTGACCCCTGCTATAAG 30640
v v v v i
C hAT-N116_DR#D 454 GCCTGTTAGTGACCACTGATCTAGG 430
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 18.27
Transitions / transversions = 0.50 (4/8)
Gap_init rate = 0.01 (1 / 74), avg. gap size = 1.00 (1 / 1)
+ 623 10.6 0.0 0.0 etv6flanking 30801 30885 (31377) C hAT-N31_DR DNA/hAT-Ac (1366) 96 12 62
ANNOTATION EVIDENCE:
623 10.59 0.00 0.00 etv6flanking 30801 30885 31377 C hAT-N31_DR DNA/hAT-Ac 12 96 1366
623 10.59 0.00 0.00 etv6flanking 30801 30885 (31377) C hAT-N31_DR#DNA/hAT-Ac (1366) 96 12 m_b1s001i43
etv6flanking 30801 AAGTATCGGTTCAGGCACCGTTTAGGCACCGGTATCGTTTTAAAAGTACC 30850
v i i
C hAT-N31_DR#DN 96 AAGTATCGGTTCAGGCACCGTTTTGGCACCGGTACCGTTTTAAAAGTATC 47
etv6flanking 30851 AGCTTAGCACCGGTATCGGAAAAAAACCAAACCAT 30885
iii i v v
C hAT-N31_DR#DN 46 GATTTAGCACCGGTATCGAAAAAAACCCAAACGAT 12
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 10.27
Transitions / transversions = 2.00 (6/3)
Gap_init rate = 0.00 (0 / 84), avg. gap size = 0.0 (0 / 0)
+ 528 32.8 2.8 1.6 etv6flanking 30863 31113 (31149) C Copia4-I_DR LTR/Copia (2581) 1626 1373 63 *
ANNOTATION EVIDENCE:
528 32.78 2.79 1.57 etv6flanking 30863 31113 31149 C Copia4-I_DR LTR/Copia 1373 1626 2581
528 32.78 2.79 1.57 etv6flanking 30863 31113 (31149) C Copia4-I_DR#LTR/Copia (2581) 1626 1373 m_b1s001i44
etv6flanking 30863 GTATCGGAAAAAAACCAAACCA-TCTGTTT--ACCATCTGTAAGGGAGCC 30909
i v v ii iv v - v -- i v v i vvi
C Copia4-I_DR#L 1626 GTGTCGGCATAGGACCAGTCAAATCTGTGTGAATCAACTCTAAAGGTTTC 1577
etv6flanking 30910 TTTGCTCTGGCATCAGGGTCCCTATTTCTGGTTTGGGCAAACTTCCCCTG 30959
i i vvii v v i ii i v i v ii i i v
C Copia4-I_DR#L 1576 TCTGCCCTTCTGTCCGGCTCTCTGCTCCTTGTCTGTGTGAATTTCCCTTT 1527
etv6flanking 30960 AATACACACCTCACA----CTCTTGTTCGGGCCTACCCGTTTTTCCTTTG 31005
vi i i ii ---- vv v ----i v i v i v
C Copia4-I_DR#L 1526 TGTGCATATTTCACATAGCCAGTTTTTC----TTAGCTGTATCTCCTTTT 1481
etv6flanking 31006 ATCTGCATACCTACAACAACATTTTGCAACTTCCCAACATCGTCATAGTT 31055
iv v i viv v i i i v v i
C Copia4-I_DR#L 1480 ACATTCATGCCTCTTACTACATCTTGTAATTTCCGAACATCCTCGTAGTT 1431
etv6flanking 31056 ACAATGGCCTAATAATTCATGCCATGTCTGTATGTCGTGACAGACATTAC 31105
i i i v v v i vi i i v v i
C Copia4-I_DR#L 1430 GCAATGACCCAAAATTTCATGCCAAGTTTGTAGATCATGGCACACTTTGC 1381
etv6flanking 31106 ACTTATCA 31113
vi
C Copia4-I_DR#L 1380 ACTGGTCA 1373
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 43.44
Transitions / transversions = 1.19 (44/37)
Gap_init rate = 0.03 (7 / 250), avg. gap size = 1.57 (11 / 7)
+ 1151 33.9 2.3 2.1 etv6flanking 31243 31899 (30363) C Copia4-I_DR LTR/Copia (3315) 892 235 63
ANNOTATION EVIDENCE:
1151 33.90 2.28 2.13 etv6flanking 31243 31899 30363 C Copia4-I_DR LTR/Copia 235 892 3315
1151 33.90 2.28 2.13 etv6flanking 31243 31899 (30363) C Copia4-I_DR#LTR/Copia (3315) 892 235 m_b2s001i3
etv6flanking 31243 ACACCATCTTGTTTGTCCTTACGCCTGCACGTGGCATCTTTATGTGTGTC 31292
i v iivi viv i iv ivv vvi ii
C Copia4-I_DR#L 892 ACACCATCTCGGTCAGTCTTTTTCTTGCACAAGAATTCAGCATGTGTGCT 843
etv6flanking 31293 ACTTCTGCAAAAACTACACCATG-TCTCCTGTCGACACGCTCTCGCTCTG 31341
i i i ivi i ii- ii v - ivii vv i
C Copia4-I_DR#L 842 ATTTTTACAGTGATTACACCACACTCTTTTGTAG-CATTTCCGGGCCCTG 794
etv6flanking 31342 TGGCCTTTGAAGCCACACTTGAAACATAAAATTTCTGTGTCTTC-TTGGC 31390
v v vv i v i vv v i i i - ivvi
C Copia4-I_DR#L 793 TGCCCTTTTATTCCACATTTGTAGCATATTATATTTATATCTTCATCTTT 744
etv6flanking 31391 TCCAGCCACGACCGTTTTGGCTGG---------ACGCCTTCCACTCTTCC 31431
i v -------- vv --------- v v v iv i
C Copia4-I_DR#L 743 TCTATC--------TTTTGTGTGGGGTTTGTAAAAGCCTTGCCCTTGTCT 702
etv6flanking 31432 CTTG--AGTCTTCATCACACTGTCGCTCGACTCCGTCACGTTTATCTTTT 31479
v --i i vv v ---ii iv v i i i
C Copia4-I_DR#L 701 CGTGCAGGTCTTCATCACATTGTCTGTAG---TTGCAACTTTCATTTTCT 655
etv6flanking 31480 CTGTTTCTTCAAAACTTCGTAGTTTAGTCTTGAATTCTGCAAACGTGATG 31529
i i v vi v i vv i ? v i ii
C Copia4-I_DR#L 654 CTGTCTCCTCATAAACTCGGAGTCTCCTTTTNACTTCTGTAAACGTGACA 605
etv6flanking 31530 TTATCGTCCGTATGTGCAACATGTATTGCAAATGGCTTAAA--ACTCCCA 31577
ii v vv v iv ii v v v i -- v --
C Copia4-I_DR#L 604 TCGTCTTCATTTTGTGTTATGTGGATGGCTAGTGGCTTAAACGAATCC-- 557
etv6flanking 31578 GGCAGTCCTTTTGAAACCATAGCCACTAGCAATCCTTCTCCTAACGTTTC 31627
i ivvii v i ivivi i v v ii viiv
C Copia4-I_DR#L 556 GGTAGTCCTCGGAGAACCATCGCTATGGTTAGTCCATCACTCATTAATTC 507
etv6flanking 31628 ACCCGTGATCCTCAGAGCTGTGATGGTGGTTTCTGCTCTGATGAGATAGT 31677
v v iiv i i ? v v vv v i
C Copia4-I_DR#L 506 TCCAGCATTCCTTAGAGCTGTAANGTTGTTTTCTGCTCGTATCAAATAGT 457
etv6flanking 31678 CCATTATACTCTCATGGCTTGCCTTCTGAAGCGATGTCAATGTGGTGTAC 31727
ii v ii iv iivvi v v v viv iv
C Copia4-I_DR#L 456 CTGTAACGCTCTCACTGTCACTCATGTGCAGCTGAGTCAATGCTGTGTAC 407
etv6flanking 31728 AAGTTGATTATACGGGGCTTTCCCCTCCCTGCATAATACTCTCTCAATAT 31777
v v i v i v iii v v i i i
C Copia4-I_DR#L 406 ATGTTTATTATGCGTGGTTTACTTTTGCCTGAATAATGCTCTTTCAGTAT 357
etv6flanking 31778 TTTCAGAGCTTTTCTTCCATCATCGGGCGCATCCCGCATAACTAACAAGA 31827
i i i i vv vi iv v i iii i
C Copia4-I_DR#L 356 TTTTAGGGCTTTTCTCCCGTCATCGGCAGCATCGTGTCTTACCAGTGAAA 307
etv6flanking 31828 GGCTTTTGTCATCCAGCAGTAAAATTAGCTCTGCGTATGCGTCAGCATTT 31877
i v?? i???vi i i v i vvvi i i
C Copia4-I_DR#L 306 GGCTTTTATCATCGNNCGNNNTGATCAGTTCAGCATAACAATCAGCGTTC 257
etv6flanking 31878 TTACCTTCATCTGCTGCTAGTT 31899
v v iii iv vv
C Copia4-I_DR#L 256 TTCCGTCTGTCCTCGTCTAGTT 235
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 44.84
Transitions / transversions = 1.16 (117/101)
Gap_init rate = 0.03 (19 / 656), avg. gap size = 1.53 (29 / 19)
+ 300 12.7 1.5 3.1 etv6flanking 33437 33566 (28696) + Polinton-1_DR DNA/Maverick 17599 17726 (759) 64
ANNOTATION EVIDENCE:
300 12.71 1.54 3.12 etv6flanking 33437 33566 28696 + Polinton-1_DR DNA/Maverick 17599 17726 759
300 12.71 1.54 3.12 etv6flanking 33437 33566 (28696) Polinton-1_DR#DNA/Maverick 17599 17726 (759) m_b2s001i5
etv6flanking 33437 TCACACACTCACCAACACACACACAAACACACACACACCAACACAGACAC 33486
v -- v -- ?
Polinton-1_DR 17599 TCACACACACAC--ACACACACACACACACACACACAC--ACACANACAC 17644
etv6flanking 33487 ACACATACACACACACCA--ACACACACGCACACACAGACACCAACACAC 33534
i v?-- iv v? i
Polinton-1_DR 17645 ACACACACACACACACANACACACACACGCACACACGCACACANACACGC 17694
etv6flanking 33535 ACACAAACCCACATATCAGGACACACACACAC 33566
i v v i i?viv
Polinton-1_DR 17695 ACGCACACACACACACNCACACACACACACAC 17726
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 11.78
Transitions / transversions = 0.78 (7/9)
Gap_init rate = 0.04 (5 / 129), avg. gap size = 1.20 (6 / 5)
+ 299 19.8 0.6 3.7 etv6flanking 33567 33602 (28660) + ERV1-N3-I_DR LTR/ERV1 3608 3768 (823) 65
ANNOTATION EVIDENCE:
299 19.78 0.60 3.68 etv6flanking 33435 33602 28660 + ERV1-N3-I_DR LTR/ERV1 3606 3768 823
299 19.78 0.60 3.68 etv6flanking 33435 33602 (28660) ERV1-N3-I_DR#LTR/ERV1 3606 3768 (823) m_b2s001i4
etv6flanking 33435 ACTCACACACTCACCAACACACACACAAACACACACACACCAACACAGAC 33484
v v vv v -- v
ERV1-N3-I_DR# 3606 ACACACACACACACACACACACACACACACACACACACAC--ACACACAC 3653
etv6flanking 33485 ACACACATACACACACACCAACACACACGCACACACAGACACCAACACAC 33534
v vv i v vv
ERV1-N3-I_DR# 3654 ACACACAAACACACACACACACACACACACACACACACACACACACACAC 3703
etv6flanking 33535 ACACAAACCCACATATCAGGACACACACACACCCTGTTCACAAC-CCCAT 33583
v v i ivviv v ii-- -iv i
ERV1-N3-I_DR# 3704 ACACACACACACACACACACACACACACACACACCA--CACAACATACAC 3751
etv6flanking 33584 ATATAAAGTTGTACACATT 33602
i i ? --iii
ERV1-N3-I_DR# 3752 ACACANA--CACACACATT 3768
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 23.12
Transitions / transversions = 0.68 (13/19)
Gap_init rate = 0.04 (7 / 167), avg. gap size = 1.00 (7 / 7)
+ 12 11.1 3.2 3.2 etv6flanking 34637 34711 (27551) + (CCTGCT)n Simple_repeat 1 75 (0) 66
ANNOTATION EVIDENCE:
12 11.09 3.23 3.23 etv6flanking 34637 34667 27595 + (CCTGCT)n Simple_repeat 1 31 0
12 11.09 3.23 3.23 etv6flanking 34637 34667 (27595) (CCTGCT)n#Simple_repeat 1 31 (0) m_b2s252i0
etv6flanking 34637 CCTGCTGCTGCCCCTGCTCTCTCCTCCT-CTC 34667
v i - v -
(CCTGCT)n#Sim 1 CCTGCTCCTGCTCCTGCTC-CTGCTCCTGCTC 31
Matrix = Unknown
Transitions / transversions = 0.50 (1/2)
Gap_init rate = 0.07 (2 / 30), avg. gap size = 1.00 (2 / 2)
11 18.61 7.35 5.80 etv6flanking 34644 34711 27551 + (CTGCCCT)n Simple_repeat 1 69 0
11 18.61 7.35 5.80 etv6flanking 34644 34711 (27551) (CTGCCCT)n#Simple_repeat 1 69 (0) m_b2s252i1
etv6flanking 34644 CTGCCC-CTGCTCTCT--CCTC--CTCTCTGGACTCTGATATCCTGACTT 34688
- i -- -- i vv viv - - --
(CTGCCCT)n#Si 1 CTGCCCTCTGCCCTCTGCCCTCTGCCCTCTGCCCTCTGCCCT-CTG-C-- 46
etv6flanking 34689 CCACGGCCCTCCGCCCTCTGCCC 34711
v v i
(CTGCCCT)n#Si 47 CCTCTGCCCTCTGCCCTCTGCCC 69
Matrix = Unknown
Transitions / transversions = 0.67 (4/6)
Gap_init rate = 0.10 (7 / 67), avg. gap size = 1.29 (9 / 7)
+ 18 16.1 7.1 0.0 etv6flanking 35190 35231 (27031) + (TC)n Simple_repeat 1 45 (0) 67
ANNOTATION EVIDENCE:
18 16.12 7.14 0.00 etv6flanking 35190 35231 27031 + (TC)n Simple_repeat 1 45 0
18 16.12 7.14 0.00 etv6flanking 35190 35231 (27031) (TC)n#Simple_repeat 1 45 (0) m_b2s252i2
etv6flanking 35190 TCTCTC-CTCACTCTC-CTAACTCTC-CTAACTATCTCTCTCTCT 35231
- v - vv - vv v
(TC)n#Simple_ 1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 45
Matrix = Unknown
Transitions / transversions = 0.00 (0/6)
Gap_init rate = 0.07 (3 / 41), avg. gap size = 1.00 (3 / 3)
+ 101 32.5 0.3 0.3 etv6flanking 35506 35838 (26424) + (GCC)n Simple_repeat 1 333 (0) 68
ANNOTATION EVIDENCE:
101 32.50 0.30 0.30 etv6flanking 35506 35838 26424 + (GCC)n Simple_repeat 1 333 0
101 32.50 0.30 0.30 etv6flanking 35506 35838 (26424) (GCC)n#Simple_repeat 1 333 (0) m_b2s252i3
etv6flanking 35506 GCCGCTGCAACCCCCGCC-CAGAGAGCCGCTGCCACCACCGCTGCCGCCG 35554
i vi v - v -vv i i i i
(GCC)n#Simple 1 GCCGCCGCCGCCGCCGCCGCCG-CCGCCGCCGCCGCCGCCGCCGCCGCCG 49
etv6flanking 35555 CCGCCGCCGCCGCTGCCGGCAACGCTGCCGCCGCATCCACCACCGCCAAC 35604
i v iv i vv i i iv
(GCC)n#Simple 50 CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC 99
etv6flanking 35605 AACGCCGCCAAAGTCTCTGCCGCCGCCGCTGCCACCGCCGCTGCCGCTGT 35654
iv ivv i v i i i i i i
(GCC)n#Simple 100 GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC 149
etv6flanking 35655 CGTCGCCGCCAAAAAGGCTGCCACCGCCGTTGCCCCCAACACCGGGGCCA 35704
i ivvivv i i ii v iv i vv i
(GCC)n#Simple 150 CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG 199
etv6flanking 35705 TCACCGCCGCCGCCGCTGCCTCTACCACCGCCGACGCCGCCGCCAAAGCC 35754
i i i v ii i v ivv
(GCC)n#Simple 200 CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC 249
etv6flanking 35755 GCCAAAGCCGCCGCCGCCACCGCTGCCACCAAAGCCGCCGCAGCCGCTGT 35804
ivv i i i ivv v i i
(GCC)n#Simple 250 GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC 299
etv6flanking 35805 GACCTCCAAAGCCGCCGCGGCTGCCCTCGCCGCC 35838
vi v ivv v i vi
(GCC)n#Simple 300 CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC 333
Matrix = Unknown
Transitions / transversions = 1.32 (49/37)
Gap_init rate = 0.01 (2 / 332), avg. gap size = 1.00 (2 / 2)
+ 13 16.8 0.0 0.0 etv6flanking 35921 35947 (26315) + (TAT)n Simple_repeat 1 27 (0) 69
ANNOTATION EVIDENCE:
13 16.80 0.00 0.00 etv6flanking 35921 35947 26315 + (TAT)n Simple_repeat 1 27 0
13 16.80 0.00 0.00 etv6flanking 35921 35947 (26315) (TAT)n#Simple_repeat 1 27 (0) m_b2s252i4
etv6flanking 35921 TATTATGATTATAATTCATATTATTAT 35947
v v vv
(TAT)n#Simple 1 TATTATTATTATTATTATTATTATTAT 27
Matrix = Unknown
Transitions / transversions = 0.00 (0/4)
Gap_init rate = 0.00 (0 / 26), avg. gap size = 0.0 (0 / 0)
+ 61 0.0 0.0 0.0 etv6flanking 36192 36243 (26019) + (AT)n Simple_repeat 1 52 (0) 70
ANNOTATION EVIDENCE:
61 0.00 0.00 0.00 etv6flanking 36192 36243 26019 + (AT)n Simple_repeat 1 52 0
61 0.00 0.00 0.00 etv6flanking 36192 36243 (26019) (AT)n#Simple_repeat 1 52 (0) c_b2s251i0
etv6flanking 36192 ATATATATATATATATATATATATATATATATATATATATATATATATAT 36241
(AT)n#Simple_ 1 ATATATATATATATATATATATATATATATATATATATATATATATATAT 50
etv6flanking 36242 AT 36243
(AT)n#Simple_ 51 AT 52
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 51), avg. gap size = 0.0 (0 / 0)
+ 477 15.2 9.7 10.5 etv6flanking 36250 36403 (25859) C DNA-8-23_DR DNA/hAT (298) 513 361 71
ANNOTATION EVIDENCE:
477 15.23 9.74 10.46 etv6flanking 36250 36403 25859 C DNA-8-23_DR DNA/hAT 361 513 298
477 15.23 9.74 10.46 etv6flanking 36250 36403 (25859) C DNA-8-23_DR#DNA/hAT (298) 513 361 m_b2s001i6
etv6flanking 36250 GTGACGTGCGGTGAGGTTCATGGTTGGTGAGGCTCTGACTCCTTTAGTGT 36299
ii i v i i iv
C DNA-8-23_DR#D 513 GTGACGTGCGGTGAGGTTTGTGGCTGGTGAGGCACTGACTCTTTCAAAGT 464
etv6flanking 36300 CAGATTT------ACAAATATATAAACCCAAAAGGGGCGTATT---CAAC 36340
------ i vv i v ------ ---
C DNA-8-23_DR#D 463 CAGATTTNCGNNNACAAACATATCCACTCAATA------TATTTGCCAAC 420
etv6flanking 36341 TGGTACTGGT--TATTTCATGTCTC--ATCAGCAT--TTTCCACACAACA 36384
--- i i -- i i v -- -- i i -
C DNA-8-23_DR#D 419 ---TACCGATTGTGTTTCATATATCATATCAGCATTNTTTCTATAC-ACA 374
etv6flanking 36385 CACACGCACACGGTACATA 36403
i --- ---
C DNA-8-23_DR#D 373 TA---GCA---GGTACATA 361
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 16.51
Transitions / transversions = 2.50 (15/6)
Gap_init rate = 0.14 (21 / 153), avg. gap size = 1.48 (31 / 21)
+ 76 0.0 0.0 0.0 etv6flanking 36930 36996 (25266) + (TAA)n Simple_repeat 1 67 (0) 72
ANNOTATION EVIDENCE:
76 0.00 0.00 0.00 etv6flanking 36930 36996 25266 + (TAA)n Simple_repeat 1 67 0
76 0.00 0.00 0.00 etv6flanking 36930 36996 (25266) (TAA)n#Simple_repeat 1 67 (0) c_b2s251i1
etv6flanking 36930 TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA 36979
(TAA)n#Simple 1 TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA 50
etv6flanking 36980 ATAATAATAATAATAAT 36996
(TAA)n#Simple 51 ATAATAATAATAATAAT 67
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 66), avg. gap size = 0.0 (0 / 0)
+ 355 28.3 0.0 0.0 etv6flanking 37040 37138 (25124) C Copia4-I_DR LTR/Copia (122) 4085 3987 73
ANNOTATION EVIDENCE:
355 28.28 0.00 0.00 etv6flanking 37040 37138 25124 C Copia4-I_DR LTR/Copia 3987 4085 122
355 28.28 0.00 0.00 etv6flanking 37040 37138 (25124) C Copia4-I_DR#LTR/Copia (122) 4085 3987 m_b2s001i7
etv6flanking 37040 AAACCTCTTCAGTTTCAACTTAGTTACAGGTTTGGTCATTACATCAGCAA 37089
i vi vi v i v v ? i
C Copia4-I_DR#L 4085 AAACCTCTTTAGTTTCTGCTTAGTGGCTGGCTTCGTCATGACATCNGCGA 4036
etv6flanking 37090 TCATGTTATCGGTAAAACAATACATCAAAATCACCCTTCCCTCAGTCAC 37138
? ii i ?ii ivi i ii ii v v iv i
C Copia4-I_DR#L 4035 TCATNTCGTCAGTNGGACAATATTCCAAGATTGCTTTACCATCGTTTAC 3987
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 33.41
Transitions / transversions = 2.11 (19/9)
Gap_init rate = 0.00 (0 / 98), avg. gap size = 0.0 (0 / 0)
+ 1041 25.0 4.8 1.4 etv6flanking 37144 37496 (24766) C Copia4-I_DR LTR/Copia (948) 3259 2895 73
ANNOTATION EVIDENCE:
1041 24.99 4.82 1.37 etv6flanking 37144 37496 24766 C Copia4-I_DR LTR/Copia 2895 3259 948
1041 24.99 4.82 1.37 etv6flanking 37144 37496 (24766) C Copia4-I_DR#LTR/Copia (948) 3259 2895 m_b2s001i8
etv6flanking 37144 AGTTTGCCTAAATCTTTCATTTTAAACTTTTCTGCGAGCATCTCTTTCAC 37193
i i v i vi i i i v i i
C Copia4-I_DR#L 3259 AATCTTCCCATGTCTTTCATTTTGAACCTCTCAGTGAGCATCCCTTTCAC 3210
etv6flanking 37194 -CTCTTTCAGTCTCTCTTCATTGCTTGCTGCAATGATCAAGTCATCGAGC 37242
- i - vv vii i v v v i i v v
C Copia4-I_DR#L 3209 ACTCTCT-AGAATGCTTTCACTGCTAGCTGCTATTATTAGGTCATCCACC 3161
etv6flanking 37243 CATATGATTATGATCACTTTCCC-TT---CTTTTGACTCTTTGGCATAAA 37288
ii v i i - --- -- v -- i v
C Copia4-I_DR#L 3160 CATACAATTAGGATTACTTTCTCATTGGGCTTTT--CTCGT--GTATATA 3115
etv6flanking 37289 CACAGTGGTCGGATGGGTTTTGTGTGAATCCATCCTCAGTAAGGCAATTG 37338
vi i v i ii i i i v ii v ii
C Copia4-I_DR#L 3114 CACAGTTATCAGCTGGATTTTGCATAAACCCATTCTCAGTCAAACATTCA 3065
etv6flanking 37339 TGCAAAACCCTATTCAAATTTCGGCCGGACTGTTTAAGACCGTAAAGGGA 37388
? i v vvi v i v ? i i ? i ?
C Copia4-I_DR#L 3064 NGTAATACAGCATTCCAGTTTCTGCCNGACTGCTTGAGNCCATAAAGNGA 3015
etv6flanking 37389 TTTATCTAGCTTATA---AAC--TATACCCTCTTTT---TTT----TCAT 37426
?v ?i --- -- v v? ? --- ----
C Copia4-I_DR#L 3014 TTNTTCTAGCTTNCATACAACCTTTTCNCCTNTTTTCGATTTTACCTCAT 2965
etv6flanking 37427 AACCCTCTGGTGGATTGATGTAGATCTCATAATCTATGGGAGCGTGCAAG 37476
?i ivvv iv v i ?i i v v v i i i
C Copia4-I_DR#L 2964 AACNTTCTGGCTTTTCTATGAAAANTTCACACTCTATTGGTGCATGTAAA 2915
etv6flanking 37477 TACGCAGTTTTCACGTCCAT 37496
i v i i i
C Copia4-I_DR#L 2914 TATGCTGCTTTTACATCCAT 2895
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 32.29
Transitions / transversions = 1.49 (52/35)
Gap_init rate = 0.03 (12 / 352), avg. gap size = 1.83 (22 / 12)
+ 458 32.2 2.5 0.5 etv6flanking 37854 38056 (24206) C hAT-N94_DR DNA/hAT-Charlie (513) 558 352 54
ANNOTATION EVIDENCE:
458 32.17 2.46 0.48 etv6flanking 37854 38056 24206 C hAT-N94_DR DNA/hAT-Charlie 352 558 513
458 32.17 2.46 0.48 etv6flanking 37854 38056 (24206) C hAT-N94_DR#DNA/hAT-Charlie (513) 558 352 m_b2s001i9
etv6flanking 37854 GTGGGTATGTTTGTTCAAAACCTTTATGTTTTGTCTCATAACGGCGTTTC 37903
i ivvii iv iii i i ii
C hAT-N94_DR#DN 558 GTGGATACTGCCGTTCAAAATGTCCGTGTTTCGTTTCATAGTGGCGTTTC 509
etv6flanking 37904 AAATTTCCACTTTTAATAAGTGCCACGGTTTCTGAACACATAAGACACAC 37953
v i v i v v v iv i vvv v v ii v v
C hAT-N94_DR#DN 508 ACATTTCCACTCTTTACAACTCCAATTGTCTCATTACAAATCAAGCAGAA 459
etv6flanking 37954 TGGTTTTGTGCT-CCCTGTGGGAAGTATGAACAGA-AATGA---GTCCAT 37998
i -v i v i- i iv - v v ---
C hAT-N94_DR#DN 458 TGGCTTTGTGCTGGCTTGTGGCAAA-ATAAACGCATACTTATCTGTCCAT 410
etv6flanking 37999 TCCGGATTAAATGCTTTATTTTCGCTGTCAACTTTTCTTTTTTTGGAGAG 38048
vivv i ivv i i viii v iivv v
C hAT-N94_DR#DN 409 TCAACTTTGAACTGTCTATTCTCTTCATCAAGTTTTCTTTTCCGTGAGAC 360
etv6flanking 38049 CGACATTT 38056
i
C hAT-N94_DR#DN 359 CGACATCT 352
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 38.56
Transitions / transversions = 1.10 (34/31)
Gap_init rate = 0.02 (4 / 202), avg. gap size = 1.50 (6 / 4)
+ 401 23.2 1.4 7.6 etv6flanking 38441 38580 (23682) C hAT-N116_DR DNA/hAT-Ac (682) 503 372 74
ANNOTATION EVIDENCE:
401 23.19 1.43 7.58 etv6flanking 38441 38580 23682 C hAT-N116_DR DNA/hAT-Ac 372 503 682
401 23.19 1.43 7.58 etv6flanking 38441 38580 (23682) C hAT-N116_DR#DNA/hAT-Ac (682) 503 372 m_b2s001i10
etv6flanking 38441 GTCCGGGTCCGGATGGGACGGCCTCTGGGTCCGGACCCGGACCGCGGTCC 38490
v v - i i v v i
C hAT-N116_DR#D 503 GTCCGCGTCCGTATGGGACG-CTTCTGGGTCTGGACACGGACCTCGATCC 455
etv6flanking 38491 GCCAGTTAGTGACCCCTGCTATAAG--GTCTGCACATGACGATATTTACC 38538
v v v v i --i vii -- i i --- v
C hAT-N116_DR#D 454 GCCTGTTAGTGACCACTGATCTAGGCTATCTTTGCA--ACAACA---ACA 410
etv6flanking 38539 ACACAAAATGGAGAACATGCATTGTGTATGTTAACAGTCTGA 38580
v i ---- v i i v vv iv v
C hAT-N116_DR#D 409 ACAAAAAACGG----CATTCGTTATGTTTTGTGTCTGTCTGA 372
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 25.63
Transitions / transversions = 0.76 (13/17)
Gap_init rate = 0.08 (11 / 139), avg. gap size = 1.09 (12 / 11)
+ 12 15.3 3.5 0.0 etv6flanking 38752 38780 (23482) + (GGCA)n Simple_repeat 1 30 (0) 75
ANNOTATION EVIDENCE:
12 15.26 3.45 0.00 etv6flanking 38752 38780 23482 + (GGCA)n Simple_repeat 1 30 0
12 15.26 3.45 0.00 etv6flanking 38752 38780 (23482) (GGCA)n#Simple_repeat 1 30 (0) m_b2s252i5
etv6flanking 38752 GGCAGGCAGGCAGGGTTG-AAGCAGGCAGG 38780
vvv - i
(GGCA)n#Simpl 1 GGCAGGCAGGCAGGCAGGCAGGCAGGCAGG 30
Matrix = Unknown
Transitions / transversions = 0.33 (1/3)
Gap_init rate = 0.04 (1 / 28), avg. gap size = 1.00 (1 / 1)
+ 656 10.1 0.0 0.0 etv6flanking 39066 39154 (23108) C hAT-N31_DR DNA/hAT-Ac (1362) 100 12 76
ANNOTATION EVIDENCE:
656 10.11 0.00 0.00 etv6flanking 39066 39154 23108 C hAT-N31_DR DNA/hAT-Ac 12 100 1362
656 10.11 0.00 0.00 etv6flanking 39066 39154 (23108) C hAT-N31_DR#DNA/hAT-Ac (1362) 100 12 m_b2s001i11
etv6flanking 39066 TAAAAAGTATCGGTTCAGGCACCGTTTAGGCACCGGTATCGTTTTAAAAG 39115
v i
C hAT-N31_DR#DN 100 TAAAAAGTATCGGTTCAGGCACCGTTTTGGCACCGGTACCGTTTTAAAAG 51
etv6flanking 39116 TACCAGCTTAGCACCGGTATCGGAAAAAAACCAAACCAT 39154
i iii i v v
C hAT-N31_DR#DN 50 TATCGATTTAGCACCGGTATCGAAAAAAACCCAAACGAT 12
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 9.77
Transitions / transversions = 2.00 (6/3)
Gap_init rate = 0.00 (0 / 88), avg. gap size = 0.0 (0 / 0)
+ 536 32.8 1.3 0.4 etv6flanking 39153 39385 (22877) C Copia4-I_DR LTR/Copia (2536) 1521 1287 77 *
ANNOTATION EVIDENCE:
536 32.76 1.29 0.43 etv6flanking 39153 39385 22877 C Copia1-I_DR LTR/Copia 1287 1521 2536
536 32.76 1.29 0.43 etv6flanking 39153 39385 (22877) C Copia1-I_DR#LTR/Copia (2536) 1521 1287 m_b2s001i12
etv6flanking 39153 ATCTGTGT--ACCATCTGTAAGGGAGCCTTTGCTCTGGCATCAGGGTCCC 39200
-- i vi vv iv v i v v i v
C Copia1-I_DR#L 1521 ATCTGTGTGCACTAGTTCGAGTGCAGCTTTAGCTCTTGTATCAGGCTCCC 1472
etv6flanking 39201 TATTTCTGGTTTGGGCAAACTTCCCCTGAATACACACCTCACACTCTTGT 39250
i v v i vi i v vi v i v i viv
C Copia1-I_DR#L 1471 TGTTTCGGCTCTGTACAAATTTACCCTGTGTACAAATCTCACAATTTAAA 1422
etv6flanking 39251 TCGGGCCTACCCGTTTTTCCTTTGATCTGCATACCTACAACAACATTTTG 39300
ii iii i vi i i v v i v v iviv v
C Copia1-I_DR#L 1421 TTAGATTTATCAATCTTCCCTGTTATTTTCATCCCCTTCACTACATTTTG 1372
etv6flanking 39301 CAACTTCGCAACATCGTCATAGTTACAATGGCCTAATAA-TTCATGCCAT 39349
i v v ii v i i i - i v - i v
C Copia1-I_DR#L 1371 CAATTTGGAAATGTCTTCATAATTGCAGT-GCCCAAGAATTTCGTGCCAG 1323
etv6flanking 39350 ATCTGTATGTCGTGACAGACATTACACTTATCATTA 39385
i i v i i i vivi vi v
C Copia1-I_DR#L 1322 GTTTGGATATCATAACATGAGTTACAACTATCAGTA 1287
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 43.29
Transitions / transversions = 1.17 (41/35)
Gap_init rate = 0.01 (3 / 232), avg. gap size = 1.33 (4 / 3)
+ 1093 34.7 2.0 1.8 etv6flanking 39512 40168 (22094) C Copia4-I_DR LTR/Copia (3315) 892 235 77
ANNOTATION EVIDENCE:
1093 34.72 1.98 1.82 etv6flanking 39512 40168 22094 C Copia4-I_DR LTR/Copia 235 892 3315
1093 34.72 1.98 1.82 etv6flanking 39512 40168 (22094) C Copia4-I_DR#LTR/Copia (3315) 892 235 m_b2s001i13
etv6flanking 39512 ACACCATCTTGTTTGTCCTTACGCCTGCACGTGGCATCTTTATGTGTGTC 39561
i v iivi viv i iv ivv vvi ii
C Copia4-I_DR#L 892 ACACCATCTCGGTCAGTCTTTTTCTTGCACAAGAATTCAGCATGTGTGCT 843
etv6flanking 39562 ACTTCTGCAAAAACTACACCATG-TCTCCTGTCGACACGCTCTCGCTCTG 39610
i i i ivi i ii- ii v - ivii vv i
C Copia4-I_DR#L 842 ATTTTTACAGTGATTACACCACACTCTTTTGTAG-CATTTCCGGGCCCTG 794
etv6flanking 39611 TGGCCTTTGAAGCCACACTTGAAACATAAAATTTCTGTGTCTTCTTGGCT 39660
v v vv i v i vv v i i i v vvi
C Copia4-I_DR#L 793 TGCCCTTTTATTCCACATTTGTAGCATATTATATTTATATCTTCATCTTT 744
etv6flanking 39661 CCAGCCACGACCGTTTGGGCTGG--------ACGCCTTCCACTCTTCCCT 39702
i ------v i v v iv -------- v v v iv i v
C Copia4-I_DR#L 743 TC------TATCTTTTGTGTGGGGTTTGTAAAAGCCTTGCCCTTGTCTCG 700
etv6flanking 39703 TG--AGTCTTCATCACACTGTCGCTCGACTCCGTCACGTTTATCTTTTCT 39750
--i i vv v ---ii iv v i i i
C Copia4-I_DR#L 699 TGCAGGTCTTCATCACATTGTCTGTAG---TTGCAACTTTCATTTTCTCT 653
etv6flanking 39751 GTTTCTTCAAAACTTCGTAGTTTAGTCTTGAATTCTGCAAACGTGATGTT 39800
i i v vi v i vv i ? v i ii i
C Copia4-I_DR#L 652 GTCTCCTCATAAACTCGGAGTCTCCTTTTNACTTCTGTAAACGTGACATC 603
etv6flanking 39801 ATCGTCCGTATGTGCAACATGTATTGCAAATGGCTTAAA--ACTCCCAGG 39848
i v vv v iv ii v v v i -- v --
C Copia4-I_DR#L 602 GTCTTCATTTTGTGTTATGTGGATGGCTAGTGGCTTAAACGAATCC--GG 555
etv6flanking 39849 CAGTCCTTTTGAAACCATAGCCACTAGCAATCCTTCTCCTAACGTTTCAC 39898
i ivvii v i ivivi i v v ii viiv v
C Copia4-I_DR#L 554 TAGTCCTCGGAGAACCATCGCTATGGTTAGTCCATCACTCATTAATTCTC 505
etv6flanking 39899 CCGTGATCCTCAGAGCTGTGATGGTGGTTTCTGCTCTGATGAGATAGTCC 39948
v iiv i i ? v v vv v i i
C Copia4-I_DR#L 504 CAGCATTCCTTAGAGCTGTAANGTTGTTTTCTGCTCGTATCAAATAGTCT 455
etv6flanking 39949 ATTATACTCTCATGGCTTGCCTTCTGAAGAGATGTCAATGTGGTGTACAA 39998
i v ii iv iivvi v v v vviv iv v
C Copia4-I_DR#L 454 GTAACGCTCTCACTGTCACTCATGTGCAGCTGAGTCAATGCTGTGTACAT 405
etv6flanking 39999 GTTGATTATACGGGGCTTTCCCCTCCCTGCATAATACCCGCTCAATATTT 40048
v i v i v iii v v i i vi i
C Copia4-I_DR#L 404 GTTTATTATGCGTGGTTTACTTTTGCCTGAATAATGCTCTTTCAGTATTT 355
etv6flanking 40049 TCAGAGCTTTTCTTCCATCATCGGGCGCATCCCGCATAACTAACAAGAGG 40098
i i i i vv vi iv v i iii i
C Copia4-I_DR#L 354 TTAGGGCTTTTCTCCCGTCATCGGCAGCATCGTGTCTTACCAGTGAAAGG 305
etv6flanking 40099 CTTTTGTCATCCAGCAGTAAAATTAGCTCTGCGTATGCGTCAGCATTTTT 40148
i v?? i???vi i i v i vvvi i i
C Copia4-I_DR#L 304 CTTTTATCATCGNNCGNNNTGATCAGTTCAGCATAACAATCAGCGTTCTT 255
etv6flanking 40149 ACCTTCATCTGCTGCTAGTT 40168
v v iii iv vv
C Copia4-I_DR#L 254 CCGTCTGTCCTCGTCTAGTT 235
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 46.39
Transitions / transversions = 1.13 (119/105)
Gap_init rate = 0.02 (16 / 656), avg. gap size = 1.56 (25 / 16)
+ 15 19.2 7.1 0.0 etv6flanking 42042 42083 (20179) + (TC)n Simple_repeat 1 45 (0) 78
ANNOTATION EVIDENCE:
15 19.25 7.14 0.00 etv6flanking 42042 42083 20179 + (TC)n Simple_repeat 1 45 0
15 19.25 7.14 0.00 etv6flanking 42042 42083 (20179) (TC)n#Simple_repeat 1 45 (0) m_b2s252i6
etv6flanking 42042 TCTCTC-CTCACTCTC-CTAACTCTC-CTAACTAACTCTCTCTCT 42083
- v - vv - vv vv
(TC)n#Simple_ 1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 45
Matrix = Unknown
Transitions / transversions = 0.00 (0/7)
Gap_init rate = 0.07 (3 / 41), avg. gap size = 1.00 (3 / 3)
+ 230 25.1 11.3 2.8 etv6flanking 42360 42399 (19863) + Copia-8-I_DR LTR/Gypsy 731 771 (849) 79
ANNOTATION EVIDENCE:
230 25.14 11.28 2.78 etv6flanking 42360 42399 19863 + Copia-8-I_DR LTR/Gypsy 731 771 849
230 25.14 11.28 2.78 etv6flanking 42360 42399 (19863) Copia-8-I_DR#LTR/Gypsy 731 771 (849) m_b2s001i14
etv6flanking 42360 CGCTGCAACCCCCGCC-CAG--ATAGCCGCTGCTACCGCCACT 42399
i i vv - -- v vi ii v --
Copia-8-I_DR# 731 CGCCGCAGCCAGCGCCTCAGCCAGAGCCGACGCCGCAGCCA-- 771
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 24.81
Transitions / transversions = 1.00 (5/5)
Gap_init rate = 0.10 (4 / 39), avg. gap size = 1.25 (5 / 4)
+ 33 10.1 0.0 0.0 etv6flanking 42400 42452 (19810) + (GCC)n Simple_repeat 1 53 (0) 80
ANNOTATION EVIDENCE:
33 10.14 0.00 0.00 etv6flanking 42400 42452 19810 + (GCC)n Simple_repeat 1 53 0
33 10.14 0.00 0.00 etv6flanking 42400 42452 (19810) (GCC)n#Simple_repeat 1 53 (0) c_b2s251i2
etv6flanking 42400 GCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGCTGGCGCCGCAGCCGCCAC 42449
i i v v i
(GCC)n#Simple 1 GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC 50
etv6flanking 42450 CGC 42452
(GCC)n#Simple 51 CGC 53
Matrix = Unknown
Transitions / transversions = 1.50 (3/2)
Gap_init rate = 0.00 (0 / 52), avg. gap size = 0.0 (0 / 0)
+ 278 22.1 9.2 5.0 etv6flanking 42453 42687 (19575) + Copia-8-I_DR LTR/Gypsy 629 1018 (602) 79
ANNOTATION EVIDENCE:
230 25.14 11.28 2.78 etv6flanking 42453 42677 19585 + Copia-8-I_DR LTR/Gypsy 772 1018 602
230 25.14 11.28 2.78 etv6flanking 42453 42677 (19585) Copia-8-I_DR#LTR/Gypsy 772 1018 (602) m_b2s001i14
etv6flanking 42453 AAGCGC---AGCC---GCCAAAGTCTCTGCCGGCGCTGCTGCCACCGCCG 42496
-- --- --- i v i v v i iv v vv
Copia-8-I_DR# 772 --GCGCCTCAGCCAGAGCCGACGCCGCAGCCAGCGCCTCAGCCAGAGCCG 819
etv6flanking 42497 CTGCCGCTGTCGTCGCC---GCCAAAAACGCTGCCACCGCCGTTGCCCC- 42542
vi v i iv --- i iv vi i v ivi i -
Copia-8-I_DR# 820 ACGCCGCAGCCAGCGCCTCAGCCAGAGCCGACGCCGCAGCCAGCGCCTCA 869
etv6flanking 42543 --------CAACACCGGGGCCATCACCGCCGCCA---CCGCTGCCTCTGC 42581
-------- i i vi v i v v --- vi v ?
Copia-8-I_DR# 870 GCCAGAGCCGACGCCGCAGCCAGCGCCTCAGCCAGAGCCGACGCCGCNGC 919
etv6flanking 42582 CACCGCCGACGCCGCCGCCAAAGCCGCCCAAGCCACCGCCGACGCCGCTG 42631
vv ? i--- iv vv ?
Copia-8-I_DR# 920 CAGAGCCGACGCCGCNGCCAG---CGCCTCAGCCAGAGCCGACGCCGCNG 966
etv6flanking 42632 CCA---CCAAAGCCGCCGCAGCCGTTGTGACCT---CCAAAGCCGCCGCC 42675
--- ?i v v ii?v?i --- ii
Copia-8-I_DR# 967 CCAGCGCCNGAGCCGACGCCGCCGCCNGNGCCTCGGCCGGAGCCGCCGCC 1016
etv6flanking 42676 GC 42677
Copia-8-I_DR# 1017 GC 1018
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 24.81
Transitions / transversions = 0.96 (27/28)
Gap_init rate = 0.06 (13 / 224), avg. gap size = 2.46 (32 / 13)
278 22.07 9.17 5.04 etv6flanking 42459 42687 19575 + Copia-8-I_DR LTR/Gypsy 629 866 754
278 22.07 9.17 5.04 etv6flanking 42459 42687 (19575) Copia-8-I_DR#LTR/Gypsy 629 866 (754) m_b2s001i15
etv6flanking 42459 AGCCGCCAAAGTCTCTGCCGGCGCT---GCTGCCACCGCC---GCTGCCG 42502
i i v iv i--- --- i
Copia-8-I_DR# 629 AGCTGCCAGAGTCGCTGCCACCGCCAGAGCTGCCACCGCCAGAGCTGCCA 678
etv6flanking 42503 CTGTCGTCGCCGCCAAAAACGCTGCCACCGCCGTTGCCCCCAACACCGGG 42552
i i ivv i i iv ?i i ivi i vi--- i i
Copia-8-I_DR# 679 CCGCCAGAGCTGCCAGAGCCGNCGCCGCCGCCAGCGCCTCAG---CCAGA 725
etv6flanking 42553 GCCATCACCGCCGCCACCGCTGCCTCTGCCACCGCCGACGCCGCCGCCAA 42602
iv i v -- - v vv v i
Copia-8-I_DR# 726 GCCGACGCCGCAGCCA--GC-GCCTCAGCCAGAGCCGACGCCGCAGCCAG 772
etv6flanking 42603 AGCCGCCCAAGCCACCGCCGACGCCGCTGCCA---------CCAAAGC-- 42641
--- iv vv v --------- i --
Copia-8-I_DR# 773 ---CGCCTCAGCCAGAGCCGACGCCGCAGCCAGCGCCTCAGCCAGAGCCG 819
etv6flanking 42642 -CGCCGCAGCCGTTGTGACCT---CCAAAGCCGCCGCCGCTGCCCTCGCC 42687
- i-- i - --- i v v vv
Copia-8-I_DR# 820 ACGCCGCAGCCA--GCG-CCTCAGCCAGAGCCGACGCCGCAGCCAGCGCC 866
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 22.45
Transitions / transversions = 1.29 (27/21)
Gap_init rate = 0.07 (17 / 228), avg. gap size = 1.94 (33 / 17)
+ 409 17.2 10.4 7.0 etv6flanking 43062 43186 (19076) C DNA-8-23_DR DNA/hAT (298) 513 385 81
ANNOTATION EVIDENCE:
409 17.20 10.40 6.98 etv6flanking 43062 43186 19076 C DNA-8-23_DR DNA/hAT 385 513 298
409 17.20 10.40 6.98 etv6flanking 43062 43186 (19076) C DNA-8-23_DR#DNA/hAT (298) 513 385 m_b2s001i16
etv6flanking 43062 GTGACGTGCGGTGAGGTTCATGGTTGGTGAGGCTCTGACTCCTCTAGTGT 43111
ii i v i ii iv
C DNA-8-23_DR#D 513 GTGACGTGCGGTGAGGTTTGTGGCTGGTGAGGCACTGACTCTTTCAAAGT 464
etv6flanking 43112 CAGATTT------ACAAATATATAAACCCAAAAGGGGCGTATT---CAAC 43152
------ i vv i v ------ ---
C DNA-8-23_DR#D 463 CAGATTTNCGNNNACAAACATATCCACTCAATA------TATTTGCCAAC 420
etv6flanking 43153 TGGTACTGGT--TATTTCATGTCT--TATCTGCATTCT 43186
--- i i -- i i v -- v ?
C DNA-8-23_DR#D 419 ---TACCGATTGTGTTTCATATATCATATCAGCATTNT 385
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 19.07
Transitions / transversions = 1.86 (13/7)
Gap_init rate = 0.10 (13 / 124), avg. gap size = 1.69 (22 / 13)
+ 245 17.8 0.0 0.0 etv6flanking 43800 43844 (18418) + hAT-23_DR DNA/hAT-Tip100 1 45 (3530) 82
ANNOTATION EVIDENCE:
245 17.78 0.00 0.00 etv6flanking 43800 43844 18418 + hAT-23_DR DNA/hAT-Tip100 1 45 3530
245 17.78 0.00 0.00 etv6flanking 43800 43844 (18418) hAT-23_DR#DNA/hAT-Tip100 1 45 (3530) m_b2s001i17
etv6flanking 43800 CAGTGGCGGTGCGTCCATAGAGGGCGCTAGGGCGCCGCCCCTCTT 43844
ivv v i i i i
hAT-23_DR#DNA 1 CAGTGGCGGCTGGTCAATAGGGGGCGCTGGGGCGCCGCCCCCCCT 45
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 20.62
Transitions / transversions = 1.67 (5/3)
Gap_init rate = 0.00 (0 / 44), avg. gap size = 0.0 (0 / 0)
+ 23 22.1 0.0 0.0 etv6flanking 43859 43906 (18356) + A-rich Low_complexity 1 48 (0) 83
ANNOTATION EVIDENCE:
23 22.13 0.00 0.00 etv6flanking 43859 43906 18356 + (A)n Simple_repeat 1 48 0
23 22.13 0.00 0.00 etv6flanking 43859 43906 (18356) (A)n#Simple_repeat 1 48 (0) m_b2s252i7
etv6flanking 43859 AAAAAAAAAAAAAAAAAAAAATATTTAAAAAAAATATTATTAAAAAAA 43906
v vvv v vv vv
(A)n#Simple_r 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 48
Matrix = Unknown
Transitions / transversions = 0.00 (0/9)
Gap_init rate = 0.00 (0 / 47), avg. gap size = 0.0 (0 / 0)
+ 600 31.4 4.5 3.6 etv6flanking 44312 44774 (17488) + hAT-23_DR DNA/hAT-Tip100 479 945 (2630) 84
ANNOTATION EVIDENCE:
600 31.38 4.54 3.64 etv6flanking 44312 44774 17488 + hAT-23_DR DNA/hAT-Tip100 479 945 2630
600 31.38 4.54 3.64 etv6flanking 44312 44774 (17488) hAT-23_DR#DNA/hAT-Tip100 479 945 (2630) m_b2s001i18
etv6flanking 44312 GAACACTCTGTGGCATCTCTACGCGAAACA-CCTTTCAATCGACGGTCAG 44360
v i i v i i i i-i i i - v vvv i v ii
hAT-23_DR#DNA 479 GAAAATTCCGTTGTATCTTTGCA-AAGATATCCGTTCACAAGGCGTTTGG 527
etv6flanking 44361 ATATTGACAAGAAGAGGCTGAAAAAGTTGGGACCCGAACATCCGGATTTA 44410
ivv v i i iv v ii i v v v iv vvvi i
hAT-23_DR#DNA 528 ATGAAGAAAAAAAAAGAATCAAGGAGCTTGGACCAGATCGACCTTCCTTG 577
etv6flanking 44411 AACATTCT---GCAGTAAAGCACTGACCGCGGGAGGAC-TACAC-CGTAG 44455
v v v--- v --- i i v vi - - vi
hAT-23_DR#DNA 578 CAAATTCAACAGCAGTCAAG---TGATCGTGGGCGCGCGTACACTCGGGG 624
etv6flanking 44456 CTTCTCCTCGAGC-CTA--TATGCTAACCGGAGCTGGTTAGCTGGAGGCT 44502
i --- - v-- vi v i i v vv iv
hAT-23_DR#DNA 625 CTTTTCC---AGCACTTGTTATGACAAACGGAGCTGGCTGGCAGGTTGTG 671
etv6flanking 44503 CAGTGAGTCATGCACTGTTTA--GTTTCCCCTTTCTGTTGTTTCAAAGTT 44550
vv i - - -- v v i i i
hAT-23_DR#DNA 672 ATGTAAGTCATGC-CT-TTTACTGTTTCCCGTGTTTGCTGTTTCAAAGTC 719
etv6flanking 44551 CTGGGACTGAAACTCTCTGGACTACAAC-GGGGTGAG-GATCTAAAGAGC 44598
v i vi v v - vv - i ivi
hAT-23_DR#DNA 720 CTGGCACCGAAACGTTGTGGACAACAACAGGGGTTCGCGATTTAAAACAC 769
etv6flanking 44599 --TTCAGACAAGTGGAAGAAGCACAAATCCTGCCGCAGTTATCTAGCTAA 44646
-- v v v viv ii vviv v ii v vi
hAT-23_DR#DNA 770 CTTTCTGAAAAGTGCAAGCGTCATGAAAGTAGCCGAAGCCATCTTGACAA 819
etv6flanking 44647 GAGCATGAAGCTAACGAGCTAACAGCATGAAGCTAACCCTGAAGAGCAGA 44696
vivi i -- v i vviv --v v v v v---- vv
hAT-23_DR#DNA 820 CGCTATGAGGCT--CCAGTTTTTTG--GGAAGCTTAGCATT----GCCCA 861
etv6flanking 44697 GCAGCAGGAGGAG----ACCGAACT-GCATC-GAAAACACAACAAAGAAG 44740
i vi v ---- v i i - i- ii ii i
hAT-23_DR#DNA 862 ACAGCTAGATGAGGGCTACAGGATTGGCATTAGAAGGCACAATGAAGAGG 911
etv6flanking 44741 TTCTGAAAAACAGACACATCCCCTCCGGAATAAT 44774
vv i iv ii
hAT-23_DR#DNA 912 TTAGGAAAAATAGACACATCCTGTCTAGAATAAT 945
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 38.86
Transitions / transversions = 0.89 (66/74)
Gap_init rate = 0.06 (30 / 462), avg. gap size = 1.27 (38 / 30)
+ 362 27.1 2.5 0.8 etv6flanking 45358 45476 (16786) C Copia4-I_DR LTR/Copia (122) 4085 3965 85 *
ANNOTATION EVIDENCE:
362 27.12 2.52 0.83 etv6flanking 45358 45476 16786 C Copia4-I_DR LTR/Copia 3965 4085 122
362 27.12 2.52 0.83 etv6flanking 45358 45476 (16786) C Copia4-I_DR#LTR/Copia (122) 4085 3965 m_b2s001i19
etv6flanking 45358 AAACCTCTTCAGTTTCAACTTAGTTACAGGTTTGGTCATTACATCAGCAA 45407
i vi vi v i v v ? i
C Copia4-I_DR#L 4085 AAACCTCTTTAGTTTCTGCTTAGTGGCTGGCTTCGTCATGACATCNGCGA 4036
etv6flanking 45408 TCATGTTATCGGTAGAACAATACATCAAAATCACCCTTCCCTCAATCCCA 45457
? ii i ? i ivi i ii ii v v iv iv i
C Copia4-I_DR#L 4035 TCATNTCGTCAGTNGGACAATATTCCAAGATTGCTTTACCATCGTTTACG 3986
etv6flanking 45458 GTTAACCT---GAAATCAATAC 45476
vv --- -i
C Copia4-I_DR#L 3985 GTTTCCCTTACGAAAT-GATAC 3965
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 30.39
Transitions / transversions = 1.67 (20/12)
Gap_init rate = 0.02 (2 / 118), avg. gap size = 2.00 (4 / 2)
+ 1286 26.6 4.0 1.3 etv6flanking 45467 45915 (16347) C Copia4-I_DR LTR/Copia (924) 3283 2823 85
ANNOTATION EVIDENCE:
1286 26.63 4.01 1.30 etv6flanking 45467 45915 16347 C Copia4-I_DR LTR/Copia 2823 3283 924
1286 26.63 4.01 1.30 etv6flanking 45467 45915 (16347) C Copia4-I_DR#LTR/Copia (924) 3283 2823 m_b2s001i20
etv6flanking 45467 AAATCAATACCCAG-AAATGTTTTGAGTTTGCCTAAATCTTTCTTTTTAA 45515
v - ii vi - i vi v i
C Copia4-I_DR#L 3283 AAATCTATACCCAGGAAATGTTTCAATCTT-CCCATGTCTTTCATTTTGA 3235
etv6flanking 45516 ACTTTTCTACGAGCATCTCTTTCAC-CTCGTTCAGTCTCTCTTCATTGCT 45564
i i vii i - - ii vv vii i
C Copia4-I_DR#L 3234 ACCTCTCAGTGAGCATCCCTTTCACACTC-TCTAGAATGCTTTCACTGCT 3186
etv6flanking 45565 TGCTGCAATGATCAAGTCATCGACCCATATGATTATGATCACTTTCCC-T 45613
v v v i i v ii v i i -
C Copia4-I_DR#L 3185 AGCTGCTATTATTAGGTCATCCACCCATACAATTAGGATTACTTTCTCAT 3136
etv6flanking 45614 T---CTTTTGACTCTTTGGCATAAACACAGTGGTCGGATGGGTTTTGTGT 45660
--- -- v -- i v vi i v i ii
C Copia4-I_DR#L 3135 TGGGCTTTT--CTCGT--GTATATACACAGTTATCAGCTGGATTTTGCAT 3090
etv6flanking 45661 GAATCCATCCTCAGTAAGGCAATTGTGCAAAACTCTATTCCAATTTTGTC 45710
i i i v ii v ii? i v vvi i ivv
C Copia4-I_DR#L 3089 AAACCCATTCTCAGTCAAACATTCANGTAATACAGCATTCCAGTTTCTGC 3040
etv6flanking 45711 CGGACTGTTTAAGACCGTAAAGGGATTTCTCTAGCTTATA---AAC--TA 45755
? i i ? i ? ?i ?i --- -- v
C Copia4-I_DR#L 3039 CNGACTGCTTGAGNCCATAAAGNGATTNTTCTAGCTTNCATACAACCTTT 2990
etv6flanking 45756 TACCCTCTTTTT-------CTTCATAACCCTCTGGTGGATTGATGTGGAT 45798
v? ? i------- i ?i ivvv iv vii ?
C Copia4-I_DR#L 2989 TCNCCTNTTTTCGATTTTACCTCATAACNTTCTGGCTTTTCTATGAAAAN 2940
etv6flanking 45799 CTCATAATCTATGGGAGCGTGCAAGTACGCAGTTTTCACGTCCATTTGGT 45848
i i v v v i i i i v i i i v v
C Copia4-I_DR#L 2939 TTCACACTCTATTGGTGCATGTAAATATGCTGCTTTTACATCCATGTCGT 2890
etv6flanking 45849 GGAGGAGTAAATTCTCCTGTGCAGCTTTTTGTAGCACCACCCTTACACTC 45898
i vi vi ii i ?i i i ??? i vi v i v
C Copia4-I_DR#L 2889 GAACAATCAGGTTTTCNCGCGCGGNNNTTTGCATTAACACTCTTACACTA 2840
etv6flanking 45899 GTCATGTCTGCCGTGGG 45915
iv v v
C Copia4-I_DR#L 2839 GTCATGTTAGCAGTTGG 2823
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 33.86
Transitions / transversions = 1.62 (73/45)
Gap_init rate = 0.03 (13 / 448), avg. gap size = 1.85 (24 / 13)
+ 384 19.8 2.9 2.9 etv6flanking 45918 46021 (16241) + DNA-8-22_DR DNA/hAT-Ac 1 104 (1330) 86
ANNOTATION EVIDENCE:
384 19.80 2.88 2.88 etv6flanking 45918 46021 16241 + DNA-8-22_DR DNA/hAT-Ac 1 104 1330
384 19.80 2.88 2.88 etv6flanking 45918 46021 (16241) DNA-8-22_DR#DNA/hAT-Ac 1 104 (1330) m_b2s001i21
etv6flanking 45918 GGGTTGGGTACCGGAAACCGGTGCTAATGTGGCACCGGTTCCAATACATC 45967
i v i v i i v vv ii v
DNA-8-22_DR#D 1 GGGTTGGGTACCGAAACCCGGTGCCATTATAGCACCGGTACCTTTGTAAC 50
etv6flanking 45968 CGGTAT-TACCCGGATCGAAAC-GCA-ATGCACATTTCAGTGCTTCTTTC 46014
- - i v - - --v i i vv i
DNA-8-22_DR#D 51 CGGTATGTA-CCGGACCGAATCAGCATATG--AATTTCGGTGCCTAATTT 97
etv6flanking 46015 CGGTGCC 46021
DNA-8-22_DR#D 98 CGGTGCC 104
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 21.89
Transitions / transversions = 1.00 (10/10)
Gap_init rate = 0.06 (6 / 103), avg. gap size = 1.00 (6 / 6)
+ 268 8.1 0.0 0.0 etv6flanking 46966 47002 (15260) + hAT-N31_DR DNA/hAT-Ac 1 37 (1425) 87
ANNOTATION EVIDENCE:
268 8.11 0.00 0.00 etv6flanking 46966 47002 15260 + hAT-N31_DR DNA/hAT-Ac 1 37 1425
268 8.11 0.00 0.00 etv6flanking 46966 47002 (15260) hAT-N31_DR#DNA/hAT-Ac 1 37 (1425) m_b2s001i22
etv6flanking 46966 TAGGGATGGGTATCGTTTGGGTTTTTTCCGATACCAG 47002
v i i
hAT-N31_DR#DN 1 TAGGGTTGGGTATCGTTTGGGTTTTTTTCGATACCGG 37
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 5.91
Transitions / transversions = 2.00 (2/1)
Gap_init rate = 0.00 (0 / 36), avg. gap size = 0.0 (0 / 0)
+ 12 11.1 3.2 3.2 etv6flanking 47309 47339 (14923) + (CCTGCT)n Simple_repeat 1 31 (0) 88
ANNOTATION EVIDENCE:
12 11.09 3.23 3.23 etv6flanking 47309 47339 14923 + (CCTGCT)n Simple_repeat 1 31 0
12 11.09 3.23 3.23 etv6flanking 47309 47339 (14923) (CCTGCT)n#Simple_repeat 1 31 (0) m_b2s252i8
etv6flanking 47309 CCTGCTGCTGCCCCTGCTCTCTCCTCCT-CTC 47339
v i - v -
(CCTGCT)n#Sim 1 CCTGCTCCTGCTCCTGCTC-CTGCTCCTGCTC 31
Matrix = Unknown
Transitions / transversions = 0.50 (1/2)
Gap_init rate = 0.07 (2 / 30), avg. gap size = 1.00 (2 / 2)
+ 18 16.1 7.1 0.0 etv6flanking 47861 47902 (14360) + (TC)n Simple_repeat 1 45 (0) 89
ANNOTATION EVIDENCE:
18 16.12 7.14 0.00 etv6flanking 47861 47902 14360 + (TC)n Simple_repeat 1 45 0
18 16.12 7.14 0.00 etv6flanking 47861 47902 (14360) (TC)n#Simple_repeat 1 45 (0) m_b2s252i9
etv6flanking 47861 TCTCTC-CTCACTCTC-CTAACTCTC-CTAACTATCTCTCTCTCT 47902
- v - vv - vv v
(TC)n#Simple_ 1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 45
Matrix = Unknown
Transitions / transversions = 0.00 (0/6)
Gap_init rate = 0.07 (3 / 41), avg. gap size = 1.00 (3 / 3)
+ 36 24.0 1.0 1.0 etv6flanking 48177 48272 (13990) + (GCC)n Simple_repeat 1 96 (0) 90
ANNOTATION EVIDENCE:
36 23.99 1.04 1.04 etv6flanking 48177 48272 13990 + (GCC)n Simple_repeat 1 96 0
36 23.99 1.04 1.04 etv6flanking 48177 48272 (13990) (GCC)n#Simple_repeat 1 96 (0) m_b2s252i10
etv6flanking 48177 GCCGCTGCTACCCCCGCC-CAGAGAGCCGCTGCCACCACCGCTGCCGCCG 48225
i ii v - v -vv i i i i
(GCC)n#Simple 1 GCCGCCGCCGCCGCCGCCGCCG-CCGCCGCCGCCGCCGCCGCCGCCGCCG 49
etv6flanking 48226 CCGCCGCCGCCGCTGCCGGCAACGCTGCCGCCGCAGCCACCACCGCC 48272
i v iv i v i i
(GCC)n#Simple 50 CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCC 96
Matrix = Unknown
Transitions / transversions = 1.71 (12/7)
Gap_init rate = 0.02 (2 / 95), avg. gap size = 1.00 (2 / 2)
+ 277 24.2 7.8 3.7 etv6flanking 48275 48506 (13756) + Copia-8-I_DR LTR/Gypsy 626 866 (754) 91
ANNOTATION EVIDENCE:
277 24.18 7.76 3.73 etv6flanking 48275 48506 13756 + Copia-8-I_DR LTR/Gypsy 626 866 754
277 24.18 7.76 3.73 etv6flanking 48275 48506 (13756) Copia-8-I_DR#LTR/Gypsy 626 866 (754) m_b2s001i23
etv6flanking 48275 CAACGCCGCCAAAGTCTCTGTCACCGCC---GCTGCCACCGCC---GCTG 48318
iv i i v i --- ---
Copia-8-I_DR# 626 CAGAGCTGCCAGAGTCGCTGCCACCGCCAGAGCTGCCACCGCCAGAGCTG 675
etv6flanking 48319 CCGCTGTCGTCGCCGCCAAAAAGGCTGCCACCGCCGTTGCCCCCAACACC 48368
i i i ivv i i ivv ?i i ivi i vi---
Copia-8-I_DR# 676 CCACCGCCAGAGCTGCCAGAGCCGNCGCCGCCGCCAGCGCCTCAG---CC 722
etv6flanking 48369 GGGGCCATCACCGCCGCCACCGCTGCCTCTACCACCGCCGACGCCGCCGC 48418
i i iv i v -- - vi vv v
Copia-8-I_DR# 723 AGAGCCGACGCCGCAGCCA--GC-GCCTCAGCCAGAGCCGACGCCGCAGC 769
etv6flanking 48419 CAAAGCC---GCCAAAGCCGCCGCCGC---CACCGCTGCCACCAAAGCCG 48462
iv --- i v --- v iv vi i
Copia-8-I_DR# 770 CAGCGCCTCAGCCAGAGCCGACGCCGCAGCCAGCGCCTCAGCCAGAGCCG 819
etv6flanking 48463 ---CCGCAGCCGCTGTGACCT---CCAAAGCCGCCGCGGCTGCCCTCGCC 48506
--- i-- i - --- i v v v vv
Copia-8-I_DR# 820 ACGCCGCAGCCA--GCG-CCTCAGCCAGAGCCGACGCCGCAGCCAGCGCC 866
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 25.49
Transitions / transversions = 1.25 (30/24)
Gap_init rate = 0.06 (15 / 231), avg. gap size = 1.80 (27 / 15)
+ 13 16.8 0.0 0.0 etv6flanking 48592 48618 (13644) + (TAT)n Simple_repeat 1 27 (0) 92
ANNOTATION EVIDENCE:
13 16.80 0.00 0.00 etv6flanking 48592 48618 13644 + (TAT)n Simple_repeat 1 27 0
13 16.80 0.00 0.00 etv6flanking 48592 48618 (13644) (TAT)n#Simple_repeat 1 27 (0) m_b2s252i11
etv6flanking 48592 TATTATGATTATAATTCATATTATTAT 48618
v v vv
(TAT)n#Simple 1 TATTATTATTATTATTATTATTATTAT 27
Matrix = Unknown
Transitions / transversions = 0.00 (0/4)
Gap_init rate = 0.00 (0 / 26), avg. gap size = 0.0 (0 / 0)
+ 289 24.8 14.4 2.2 etv6flanking 49542 49793 (12469) + Helitron-4_DR RC/Helitron 4264 4482 (27386) 93
ANNOTATION EVIDENCE:
289 30.75 5.16 2.28 etv6flanking 49542 49754 12508 + Helitron-4_DR RC/Helitron 4264 4482 27386
289 30.75 5.16 2.28 etv6flanking 49542 49754 (12508) Helitron-4_DR#RC/Helitron 4264 4482 (27386) m_b2s001i24
etv6flanking 49542 TGGGTGAGGGGCGTCGCCGGTCGAACTTTT--AGGTGGCGCGAGAGAGCA 49589
i vi - i v iv i -- vivv iv
Helitron-4_DR 4264 TGGATCGGGGGC-TCGTCCGTTTAATTTTTCTAGGTGGCGCTGTCGAGTC 4312
etv6flanking 49590 ATTATTGAGA-GCCCAATTTTCGAAGTCGGTGTCGAAACCTAAGTTT-CA 49637
- vv - -i i i vi iv - v i - i
Helitron-4_DR 4313 ATT-TTGCCACGCCCA-CTTCCGAAGCCCATAAC-AAACGTAAATTTTCG 4359
etv6flanking 49638 CCAATCCTGACAAGCATGCCAAATTTGGTGAGTTTTGGGATATGATGCAT 49687
v i viv ii v i ?v v ii - vi v
Helitron-4_DR 4360 CCACTTCTGAGGCGTGTGCAAAGTTNCGTGAGTTTTCGGGCATG-TTTAG 4408
etv6flanking 49688 ACCCCCAATA-TGCGGT------CGAAGAGTAAAAATAAAAACCGGAATA 49730
v i v -i i ------ vi iiv ? ? ? iviv
Helitron-4_DR 4409 CCCCTCAAAACCGCGATTCATTCCGCGGGAGAANAANAANAATAATAATA 4458
etv6flanking 49731 GGAAGAAGAAGAAGAATTCTAACA 49754
iv ? ivi iv i ?
Helitron-4_DR 4459 ATAANAAACGGAGCAATTCCAANA 4482
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 37.95
Transitions / transversions = 1.21 (35/29)
Gap_init rate = 0.05 (10 / 212), avg. gap size = 1.60 (16 / 10)
279 24.62 14.69 2.18 etv6flanking 49549 49793 12469 + Helitron-4_DR RC/Helitron 29619 29893 1975
279 24.62 14.69 2.18 etv6flanking 49549 49793 (12469) Helitron-4_DR#RC/Helitron 29619 29893 (1975) m_b2s001i25
etv6flanking 49549 GGGGCGTCGCCGGTCGAACTTT--TAGGTGGCGCGAGAGAGCAATTATTG 49596
-i? i v ? i? -- vivv iv -
Helitron-4_DR 29619 GGGGC-CNGTCCGTCNAATNTTCNTAGGTGGCGCTGTCGAGTCATT-TTG 29666
etv6flanking 49597 AGA-GCCCAATTTTCGAAGTCGGTGTCGAAACCTAAGTTT-CACCAATCC 49644
vv - -i i ii vi iv - v i - i v i
Helitron-4_DR 29667 CCACGCCCA-CTTCCGAAACCCATAAC-AAACGTAAATTTTCGCCACTTC 29714
etv6flanking 49645 TGACAAGCATGCCAAATTTGGTGAGTTTTGGGATATGATGCATACCCCCA 49694
iviv ii v i v v ii - vi v? i
Helitron-4_DR 29715 TGGGGCGTGTGCAAAGTTTCGTGAGTTTTCGGGCATG-TTTAGNCCCTCA 29763
etv6flanking 49695 ATA-TGCGGT------CGAAGAGTAAAAATAAAAACCGGAATAGGAAGAA 49737
v -i i ------ vi iv i v i vvi? i? ???
Helitron-4_DR 29764 AAACCGCGATTCATTCCGCGGAAGAAGAAGAAGAAGAANAATAANAANNN 29813
etv6flanking 49738 GA---AGAAGAATTCTAA------CAATTTCAATAGGGTCCT-------- 49770
??---??????????? ------ i - --------
Helitron-4_DR 29814 NNNCGNNNNNNNNNNNAAACGGAGCAATTCCAATAGGG-CCTACGCACCG 29862
etv6flanking 49771 --------CTCGGACCCTAATAATAATGTTG 49793
-------- v v i
Helitron-4_DR 29863 TTTCGGTGCTCGGTCCCTAATAATAAAGCTG 29893
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 32.31
Transitions / transversions = 1.27 (33/26)
Gap_init rate = 0.06 (15 / 244), avg. gap size = 2.80 (42 / 15)
+ 369 14.9 9.0 0.0 etv6flanking 51280 51346 (10916) + DNA-8-23_DR DNA/hAT 441 513 (298) 94
ANNOTATION EVIDENCE:
369 14.93 8.96 0.00 etv6flanking 51280 51346 10916 + DNA-8-23_DR DNA/hAT 441 513 298
369 14.93 8.96 0.00 etv6flanking 51280 51346 (10916) DNA-8-23_DR#DNA/hAT 441 513 (298) m_b2s001i26
etv6flanking 51280 ATATATTTATG------AATCTGACACTAAAGGAGTCAGAGCCTCACCAA 51323
i i ?------ vi i i v i
DNA-8-23_DR#D 441 ATATGTTTGTNNNCGNAAATCTGACTTTGAAAGAGTCAGTGCCTCACCAG 490
etv6flanking 51324 CCATGAACCTCACCGCACGTCAC 51346
ii
DNA-8-23_DR#D 491 CCACAAACCTCACCGCACGTCAC 513
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 17.49
Transitions / transversions = 4.00 (8/2)
Gap_init rate = 0.02 (1 / 66), avg. gap size = 6.00 (6 / 1)
+ 173 4.9 2.4 0.0 etv6flanking 51353 51561 (10701) + (AT)n Simple_repeat 1 214 (0) 95
ANNOTATION EVIDENCE:
173 4.94 2.39 0.00 etv6flanking 51353 51561 10701 + (AT)n Simple_repeat 1 214 0
173 4.94 2.39 0.00 etv6flanking 51353 51561 (10701) (AT)n#Simple_repeat 1 214 (0) c_b2s251i3
etv6flanking 51353 ATATATATATATATATATATATATATATATATATATATATACATATATAT 51402
i
(AT)n#Simple_ 1 ATATATATATATATATATATATATATATATATATATATATATATATATAT 50
etv6flanking 51403 ATCT-TACATATATATATAAATACATATCT-TATATATCT-TATATATAT 51449
v - i v i v - v -
(AT)n#Simple_ 51 ATATATATATATATATATATATATATATATATATATATATATATATATAT 100
etv6flanking 51450 ATATATATATATATATATTTATATATATATATATATATATATCT-TATAT 51498
v v -
(AT)n#Simple_ 101 ATATATATATATATATATATATATATATATATATATATATATATATATAT 150
etv6flanking 51499 ATCT-TATATATATATATATATATATATATATATATATATATATATATAT 51547
v -
(AT)n#Simple_ 151 ATATATATATATATATATATATATATATATATATATATATATATATATAT 200
etv6flanking 51548 ATATATATATATAT 51561
(AT)n#Simple_ 201 ATATATATATATAT 214
Matrix = Unknown
Transitions / transversions = 0.43 (3/7)
Gap_init rate = 0.02 (5 / 208), avg. gap size = 1.00 (5 / 5)
+ 248 27.7 2.9 2.9 etv6flanking 52366 52674 (9588) C Copia-8-I_DR LTR/Gypsy (676) 944 636 96
ANNOTATION EVIDENCE:
248 27.67 2.91 2.91 etv6flanking 52366 52674 9588 C Copia-8-I_DR LTR/Gypsy 636 944 676
248 27.67 2.91 2.91 etv6flanking 52366 52674 (9588) C Copia-8-I_DR#LTR/Gypsy (676) 944 636 m_b2s001i27
etv6flanking 52366 GGCGAGGGCAGCGGCGGCGGCTCTGGAGGTCGCAGCGGCTGCGGCGGCTT 52415
vv ? v v? iv iv vi v vvv
C Copia-8-I_DR# 944 GGCGCTGGCNGCGGCGTCGGCTCTGGCNGCGGCGTCGGCTCTGGCTGAGG 895
etv6flanking 52416 TGGTGGCAGCGGCGTCGGCGGTGGCTTGGGCGGCTTTGGCGGCGGCGGCG 52465
i v v vv vi ---i v v
C Copia-8-I_DR# 894 CGCTGGCTGCGGCGTCGGCTCTGGCTGAGGCG---CTGGCTGCGGCGTCG 848
etv6flanking 52466 GCGGTGGCAGAGGCAGCGGTGGCGGCGGTGATGGCCCCGGTGTTGGGGGC 52515
vv v - -- v i vi i i ---iv i
C Copia-8-I_DR# 847 GCTCTGGCTGAGGC-GC--TGGCTGCGGCGTCGGCTCTGG---CTGAGGC 804
etv6flanking 52516 AACGGCGGTGGCAGCGTTTTTGGC---GGCGACGACAGCGGCAGCGGCGG 52562
ivi v i iv vi i --- vi i v iv vv
C Copia-8-I_DR# 803 GCTGGCTGCGGCGTCGGCTCTGGCTGAGGCGCTGGCTGCGGCGTCGGCTC 754
etv6flanking 52563 TGGCAGCGGCGCCGGCAGAGACTTTGGC---GGCT---GTGCTGGCGGTG 52606
v v i v v i v i --- --- i i
C Copia-8-I_DR# 753 TGGCTGAGGCGCTGGCTGCGGCGTCGGCTCTGGCTGAGGCGCTGGCGGCG 704
etv6flanking 52607 GTGGCTGCGGCGGCAGCGGCGGCGGAAGCGGCAGCGGCGGCGGCAGCAGT 52656
i ? v vvi vvi vi i vvi i vv
C Copia-8-I_DR# 703 GCGNCGGCTCTGGCAGCTCTGGCGGTGGCAGCTCTGGCGGTGGCAGCTCT 654
etv6flanking 52657 GGCAGTGGCAGCGGCTCT 52674
i i
C Copia-8-I_DR# 653 GGCGGTGGCAGCGACTCT 636
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 28.49
Transitions / transversions = 0.73 (35/48)
Gap_init rate = 0.04 (12 / 308), avg. gap size = 1.50 (18 / 12)
+ 18 16.1 7.1 0.0 etv6flanking 52970 53011 (9251) + GA-rich Low_complexity 1 45 (0) 97
ANNOTATION EVIDENCE:
18 16.12 7.14 0.00 etv6flanking 52970 53011 9251 + (AG)n Simple_repeat 1 45 0
18 16.12 7.14 0.00 etv6flanking 52970 53011 (9251) (AG)n#Simple_repeat 1 45 (0) m_b2s252i12
etv6flanking 52970 AGAGAGAGAGATAGTTAG-GAGAGTTAG-GAGAGTGAG-GAGAGA 53011
v vv - vv - v -
(AG)n#Simple_ 1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 45
Matrix = Unknown
Transitions / transversions = 0.00 (0/6)
Gap_init rate = 0.07 (3 / 41), avg. gap size = 1.00 (3 / 3)
+ 14 21.4 0.0 7.7 etv6flanking 53400 53455 (8807) + A-rich Low_complexity 1 52 (0) 98
ANNOTATION EVIDENCE:
14 21.37 0.00 7.69 etv6flanking 53400 53455 8807 + (AAAAC)n Simple_repeat 1 52 0
14 21.37 0.00 7.69 etv6flanking 53400 53455 (8807) (AAAAC)n#Simple_repeat 1 52 (0) m_b2s252i13
etv6flanking 53400 AACACAAAGCCATAAAGAAACAAAACTAATAAACCAACAAAACGGAAACA 53449
v -v v vi - - vvv -i
(AAAAC)n#Simp 1 AAAACAAA-ACAAAACAAAACAAAAC-AA-AACAAAACAAAAC-AAAACA 46
etv6flanking 53450 AAACAA 53455
(AAAAC)n#Simp 47 AAACAA 52
Matrix = Unknown
Transitions / transversions = 0.29 (2/7)
Gap_init rate = 0.07 (4 / 55), avg. gap size = 1.00 (4 / 4)
+ 14 17.2 0.0 2.9 etv6flanking 55024 55058 (7204) + GA-rich Low_complexity 1 34 (0) 99
ANNOTATION EVIDENCE:
14 17.16 0.00 2.94 etv6flanking 55024 55058 7204 + (AGAGG)n Simple_repeat 1 34 0
14 17.16 0.00 2.94 etv6flanking 55024 55058 (7204) (AGAGG)n#Simple_repeat 1 34 (0) m_b2s252i14
etv6flanking 55024 AGATGAGAGGAGAGGTGAGGCAGCGGCGAGGCGAG 55058
v v - v v v
(AGAGG)n#Simp 1 AGAGGAGAGGAGAGGAGAGG-AGAGGAGAGGAGAG 34
Matrix = Unknown
Transitions / transversions = 0.00 (0/5)
Gap_init rate = 0.03 (1 / 34), avg. gap size = 1.00 (1 / 1)
+ 390 18.7 8.0 0.0 etv6flanking 55528 55602 (6660) + DNA-8-23_DR DNA/hAT 433 513 (298) 100
ANNOTATION EVIDENCE:
390 18.67 8.00 0.00 etv6flanking 55528 55602 6660 + DNA-8-23_DR DNA/hAT 433 513 298
390 18.67 8.00 0.00 etv6flanking 55528 55602 (6660) DNA-8-23_DR#DNA/hAT 433 513 (298) m_b2s001i28
etv6flanking 55528 TTGGGTTTATATATTTGT------AAATCTGACACTAAAGGAGTCAGAGC 55571
i vv i ------ vi i i v
DNA-8-23_DR#D 433 TTGAGTGGATATGTTTGTNNNCGNAAATCTGACTTTGAAAGAGTCAGTGC 482
etv6flanking 55572 CTCACCAACCGTGAACCTCACCGCACGTTAC 55602
i iii i
DNA-8-23_DR#D 483 CTCACCAGCCACAAACCTCACCGCACGTCAC 513
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 22.10
Transitions / transversions = 2.50 (10/4)
Gap_init rate = 0.01 (1 / 74), avg. gap size = 6.00 (6 / 1)
+ 38 9.6 5.1 0.0 etv6flanking 55609 55686 (6576) + (AT)n Simple_repeat 1 82 (0) 101
ANNOTATION EVIDENCE:
38 9.57 5.13 0.00 etv6flanking 55609 55686 6576 + (AT)n Simple_repeat 1 82 0
38 9.57 5.13 0.00 etv6flanking 55609 55686 (6576) (AT)n#Simple_repeat 1 82 (0) c_b2s251i4
etv6flanking 55609 ATATATATATATCT-TACATATATATATATATATCT-TATATATCT-TAT 55655
v - i v - v -
(AT)n#Simple_ 1 ATATATATATATATATATATATATATATATATATATATATATATATATAT 50
etv6flanking 55656 ATCT-TATATATATATATATACATGTATATAT 55686
v - i i
(AT)n#Simple_ 51 ATATATATATATATATATATATATATATATAT 82
Matrix = Unknown
Transitions / transversions = 0.75 (3/4)
Gap_init rate = 0.05 (4 / 77), avg. gap size = 1.00 (4 / 4)
+ 264 19.1 7.3 0.0 etv6flanking 55931 55998 (6264) + Helitron-4_DR RC/Helitron 150 222 (31646) 102
ANNOTATION EVIDENCE:
264 19.12 7.35 0.00 etv6flanking 55931 55998 6264 + Helitron-4_DR RC/Helitron 150 222 31646
264 19.12 7.35 0.00 etv6flanking 55931 55998 (6264) Helitron-4_DR#RC/Helitron 150 222 (31646) m_b2s001i29
etv6flanking 55931 ATAATAATATGAATTAAAGCTGCTAGCAGCGTTGAACGGGTCCTCG---- 55976
vv v v vv v ----
Helitron-4_DR 150 ATAATAATAATAATTAAAGCTGCAAGCAGCGATGATAGGGACCTCGCACC 199
etv6flanking 55977 CTGACCCA-CGCCGGTCGGGGGC 55998
v i i - vi v
Helitron-4_DR 200 CGGGCTCACCGCCGCCCGGTGGC 222
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 22.12
Transitions / transversions = 0.30 (3/10)
Gap_init rate = 0.03 (2 / 67), avg. gap size = 2.50 (5 / 2)
+ 494 28.5 5.7 1.2 etv6flanking 57469 57713 (4549) + Helitron-4_DR RC/Helitron 6597 6852 (25016) 103
ANNOTATION EVIDENCE:
494 28.49 5.71 1.17 etv6flanking 57469 57713 4549 + Helitron-4_DR RC/Helitron 6597 6852 25016
494 28.49 5.71 1.17 etv6flanking 57469 57713 (4549) Helitron-4_DR#RC/Helitron 6597 6852 (25016) m_b2s001i30
etv6flanking 57469 ATTC-TGGGTGAGGGGCGTCACCGGTCAAACTT--CTAGGTGGCGCTAGA 57515
- i vi - ii v iv i -- ivv
Helitron-4_DR 6597 ATTCGTGGATCGGGGGC-TCGTCCGTTTAATTTTTCTAGGTGGCGCTGTC 6645
etv6flanking 57516 GAGCAATTTT-TGATAGCCGCATTTCGAGGTCTATGTCATCTGGCTATTT 57564
iv -iv iiv i - i ii i i?? v i????
Helitron-4_DR 6646 GAGTCATTTTGCCACGCCCAC-TTCCGAGACCCATANNAACCNNNNATTT 6694
etv6flanking 57565 TCACCAATCCTGACACGCTTGCCAAATTTGGTGAGTTTTGGGATATGATA 57614
? i iv i ivi iv v ? v v ii v v
Helitron-4_DR 6695 NCGCCGCTTCTGGGGCGTGTGCAAANTTTCGTGAGTTTTCGGGCATGTTT 6744
etv6flanking 57615 CGTACCCCCAATATGCCCCCAAT-----GTTCAAAAATAAAAACCGGAAT 57659
v i- i v ?vv i ----- ivv ? v iviv
Helitron-4_DR 6745 AGC-CCCTCAAAANCGCCCCGATAGGGGGCGGAANAATAATAATAATAAT 6793
etv6flanking 57660 TAAAGCTGCTAGCAGCGTTGAACGGGTCCTCG----CTGACCCA-CGCCG 57704
v v vv v ---- v i i -
Helitron-4_DR 6794 TAAAGCTGCAAGCAGCGATGATAGGGACCTCGCACCCGGGCTCACCGCCG 6843
etv6flanking 57705 GTCGGGGGC 57713
vi v
Helitron-4_DR 6844 CCCGGTGGC 6852
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 33.64
Transitions / transversions = 1.03 (35/34)
Gap_init rate = 0.04 (9 / 244), avg. gap size = 1.89 (17 / 9)
+ 377 25.5 3.5 8.5 etv6flanking 59186 59468 (2794) + Helitron-4_DR RC/Helitron 29619 29888 (1980) 104
ANNOTATION EVIDENCE:
377 25.49 3.53 8.52 etv6flanking 59186 59468 2794 + Helitron-4_DR RC/Helitron 29619 29888 1980
377 25.49 3.53 8.52 etv6flanking 59186 59468 (2794) Helitron-4_DR#RC/Helitron 29619 29888 (1980) m_b2s001i31
etv6flanking 59186 GGGGCGTCGCCGGTCAAACTT--GTTGGTGGCGCTAGAGAGCAATTTTTG 59233
-i? i v ? i? --? v ivv iv vv
Helitron-4_DR 29619 GGGGC-CNGTCCGTCNAATNTTCNTAGGTGGCGCTGTCGAGTCATTTTGC 29667
etv6flanking 59234 GAAGCCGCA-TTTCGAAGTCTATGTCATCTGGCTATTTTCACCAATCCTG 59282
v v - - i ii i iv vvi vvv i v i
Helitron-4_DR 29668 CACGCC-CACTTCCGAAACCCATAACAAACGTAAATTTTCGCCACTTCTG 29716
etv6flanking 59283 ACACGCTTGCCAAATTTGGTGAGTTTTGGGATATGATACGTACTCCCAAT 59332
ivi iv v i v v ii v vv -? i i v
Helitron-4_DR 29717 GGGCGTGTGCAAAGTTTCGTGAGTTTTCGGGCATGTTTAG-NCCCTCAAA 29765
etv6flanking 59333 ATGTCCCCAAT-------GTAGAAAAATAAGAAGCGGCATAATAATACCC 59375
--- v i ------- ii i v vi v ? ? v??
Helitron-4_DR 29766 A---CCGCGATTCATTCCGCGGAAGAAGAAGAAGAAGAANAATAANAANN 29812
etv6flanking 59376 CTGTCGCTCGGACCCTAATAATAGTGAAGAACTCTAACAATTTCAATAGG 59425
???? ??????????? - ii ----------- i i
Helitron-4_DR 29813 NNNNCGNNNNNNNNNNNA-AACGG-----------AGCAATTCCAATAGG 29850
etv6flanking 59426 GTCCTCTCGGACAGCTTCGCTGTCGCTCGGACCCTAATTATAA 59468
- v- v v i -- - v v
Helitron-4_DR 29851 G-CCTA-CGCACCGTTTCG--GT-GCTCGGTCCCTAATAATAA 29888
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 31.99
Transitions / transversions = 0.89 (31/35)
Gap_init rate = 0.09 (26 / 282), avg. gap size = 1.27 (33 / 26)
+ 12 29.8 0.0 0.0 etv6flanking 59480 59524 (2738) + (ATTTAA)n Simple_repeat 1 45 (0) 105
ANNOTATION EVIDENCE:
12 29.82 0.00 0.00 etv6flanking 59480 59524 2738 + (ATTTAA)n Simple_repeat 1 45 0
12 29.82 0.00 0.00 etv6flanking 59480 59524 (2738) (ATTTAA)n#Simple_repeat 1 45 (0) m_b2s252i15
etv6flanking 59480 ATTTAATTTGACATTTGTATTTAAGTTTAATTGTAAAGTAATATT 59524
v v v iv i v v v v v
(ATTTAA)n#Sim 1 ATTTAAATTTAAATTTAAATTTAAATTTAAATTTAAATTTAAATT 45
Matrix = Unknown
Transitions / transversions = 0.22 (2/9)
Gap_init rate = 0.00 (0 / 44), avg. gap size = 0.0 (0 / 0)
+ 408 16.2 8.1 0.0 etv6flanking 61632 61705 (557) + DNA-8-23_DR DNA/hAT 433 512 (299) 106
ANNOTATION EVIDENCE:
408 16.22 8.11 0.00 etv6flanking 61632 61705 557 + DNA-8-23_DR DNA/hAT 433 512 299
408 16.22 8.11 0.00 etv6flanking 61632 61705 (557) DNA-8-23_DR#DNA/hAT 433 512 (299) m_b2s001i32
etv6flanking 61632 TTGGGTTTATATATTTGT------AAATCTGACACTAAAGGAGTCAGAGC 61675
i vv i ------ vi i i v
DNA-8-23_DR#D 433 TTGAGTGGATATGTTTGTNNNCGNAAATCTGACTTTGAAAGAGTCAGTGC 482
etv6flanking 61676 CTCACCAACCATGAACCTCACCGCACGTCA 61705
i ii
DNA-8-23_DR#D 483 CTCACCAGCCACAAACCTCACCGCACGTCA 512
Matrix = 20p45g.matrix
Kimura (with divCpGMod) = 18.61
Transitions / transversions = 2.00 (8/4)
Gap_init rate = 0.01 (1 / 73), avg. gap size = 6.00 (6 / 1)
+ 37 0.0 0.0 0.0 etv6flanking 61713 61744 (518) + (AT)n Simple_repeat 1 32 (0) 107
ANNOTATION EVIDENCE:
37 0.00 0.00 0.00 etv6flanking 61713 61744 518 + (AT)n Simple_repeat 1 32 0
37 0.00 0.00 0.00 etv6flanking 61713 61744 (518) (AT)n#Simple_repeat 1 32 (0) c_b2s251i5
etv6flanking 61713 ATATATATATATATATATATATATATATATAT 61744
(AT)n#Simple_ 1 ATATATATATATATATATATATATATATATAT 32
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 31), avg. gap size = 0.0 (0 / 0)
+ 13 30.6 0.0 1.9 etv6flanking 62019 62072 (190) + (ATTTAA)n Simple_repeat 1 53 (0) 108
ANNOTATION EVIDENCE:
13 30.62 0.00 1.89 etv6flanking 62019 62072 190 + (ATTTAA)n Simple_repeat 1 53 0
13 30.62 0.00 1.89 etv6flanking 62019 62072 (190) (ATTTAA)n#Simple_repeat 1 53 (0) m_b2s252i16
etv6flanking 62019 ATTTAATTTGACATTTGTATTTAAGTTTAATTGTAAAGTAATATTGTTTA 62068
v v v iv i v v v v v - vv
(ATTTAA)n#Sim 1 ATTTAAATTTAAATTTAAATTTAAATTTAAATTTAAATTTAAATT-TAAA 49
etv6flanking 62069 TTTA 62072
(ATTTAA)n#Sim 50 TTTA 53
Matrix = Unknown
Transitions / transversions = 0.18 (2/11)
Gap_init rate = 0.02 (1 / 53), avg. gap size = 1.00 (1 / 1)