bit perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 68 25.4 3.7 0.0 galGal6_dna 1088 1221 (48269) + CR1-X1_fAlb LINE/CR1 923 1061 (2) 1 12 11.3 6.9 0.0 galGal6_dna 1285 1313 (48177) + (AAC)n Simple_repeat 1 31 (0) 2 46 30.4 3.0 8.1 galGal6_dna 1692 1859 (47631) C CR1-X1_fAlb LINE/CR1 (9) 1054 895 3 15 27.3 5.3 1.3 galGal6_dna 1919 1994 (47496) + (TAATA)n Simple_repeat 1 79 (0) 4 47 40.1 2.3 0.8 galGal6_dna 2693 2956 (46534) C ERVL-B4-int LTR/ERVL (1055) 4659 4392 5 33 40.4 2.2 4.7 galGal6_dna 3117 3485 (46005) C TguERVL2_I-b_fAlb LTR/ERVL (692) 1380 1021 6 29 14.6 0.0 0.0 galGal6_dna 5826 5878 (43612) + (CTCT)n Simple_repeat 1 53 (0) 7 34 39.6 6.1 2.1 galGal6_dna 7490 7813 (41677) C HERVL40-int LTR/ERVL (1817) 4230 3829 8 13 25.6 5.4 0.0 galGal6_dna 8086 8141 (41349) + (TAATA)n Simple_repeat 1 59 (0) 9 86 43.1 6.3 8.5 galGal6_dna 8840 9882 (39608) C ERVL-int LTR/ERVL (1058) 4699 3678 10 79 42.8 6.7 4.9 galGal6_dna 9888 10633 (38857) C ERVL-int LTR/ERVL (2711) 3046 2288 10 17 0.0 0.0 0.0 galGal6_dna 10867 10885 (38605) + (C)n Simple_repeat 1 19 (0) 11 31 11.5 0.0 0.0 galGal6_dna 11028 11074 (38416) + (GA)n Simple_repeat 1 47 (0) 12 78 35.2 15.4 2.3 galGal6_dna 11449 11838 (37652) C ERVL-int LTR/ERVL (4) 2068 1629 10 237 39.7 6.1 5.2 galGal6_dna 12578 14375 (35115) C HERVL18-int LTR/ERVL (1162) 4885 3073 13 18 16.1 3.9 3.9 galGal6_dna 16205 16256 (33234) + (ATA)n Simple_repeat 1 52 (0) 14 209 41.3 6.8 8.1 galGal6_dna 17058 18213 (31277) C HERVK14C-int LTR/ERVK (2094) 5340 4199 15 19 17.1 0.0 0.0 galGal6_dna 20907 20939 (28551) + (C)n Simple_repeat 1 33 (0) 16 14 20.8 4.5 0.0 galGal6_dna 20940 20950 (28540) + (CCCCCT)n Simple_repeat 1 46 (0) 17 172 44.5 9.8 4.0 galGal6_dna 21468 22662 (26828) + PABL_B-int LTR/ERV1 2044 3304 (3818) 18 154 41.2 14.6 2.9 galGal6_dna 22667 23761 (25729) + PABL_B-int LTR/ERV1 3541 5025 (2753) 18 96 40.8 6.5 5.6 galGal6_dna 23742 24341 (25149) + PABL_B-int LTR/ERV1 4896 5475 (1647) 18 * 120 36.7 4.1 2.2 galGal6_dna 26285 26722 (22768) + CR1-J3_fAlb LINE/CR1 287 732 (2873) 19 806 24.1 0.3 1.2 galGal6_dna 26727 28441 (21049) + CR1-J3_fAlb LINE/CR1 2 2978 (627) 19 31 37.9 1.8 7.4 galGal6_dna 29224 29394 (20096) + TguERVL2_I-b_fAlb LTR/ERVL 1592 1753 (319) 20 58 28.2 2.0 0.0 galGal6_dna 29452 29600 (19890) + TguERVL2_I-b_fAlb LTR/ERVL 1919 2070 (2) 20 303 24.5 3.9 1.9 galGal6_dna 30025 30481 (19009) + CR1-K4_fAlb LINE/CR1 624 1089 (2) 21 13 19.1 0.0 5.3 galGal6_dna 31654 31693 (17797) + A-rich Low_complexity 1 38 (0) 22 19 31.8 2.5 1.2 galGal6_dna 32179 32258 (17232) + (AT)n Simple_repeat 1 81 (0) 23 76 39.3 6.8 7.3 galGal6_dna 32576 33636 (15854) C ERVL-int LTR/ERVL (1674) 4083 2355 24 23 3.7 0.0 0.0 galGal6_dna 34191 34218 (15272) + (CT)n Simple_repeat 1 28 (0) 25 18 20.3 2.1 2.1 galGal6_dna 35325 35372 (14118) + GA-rich Low_complexity 1 48 (0) 26 31 11.0 0.0 0.0 galGal6_dna 35774 35822 (13668) + (CT)n Simple_repeat 1 49 (0) 27 27 40.1 7.0 6.6 galGal6_dna 36037 36306 (13184) + HERVL18-int LTR/ERVL 1034 1304 (768) 28 55 29.3 0.0 1.3 galGal6_dna 36773 36931 (12559) + HERVL18-int LTR/ERVL 1914 2070 (2) 28 72 34.2 4.7 4.7 galGal6_dna 37350 37671 (11819) + HERVL18-int LTR/ERVL 2009 2330 (3717) 28 190 19.3 0.8 4.0 galGal6_dna 37737 37995 (11495) C CR1-E4_fAlb LINE/CR1 (0) 430 180 29 60 41.7 3.6 4.3 galGal6_dna 38927 39964 (9526) C ERVL-B4-int LTR/ERVL (1674) 4083 3597 30 20 4.3 0.0 0.0 galGal6_dna 40779 40802 (8688) + (T)n Simple_repeat 1 24 (0) 31 13 15.8 2.7 2.7 galGal6_dna 40938 40974 (8516) + G-rich Low_complexity 1 37 (0) 32 108 41.8 12.5 16.3 galGal6_dna 44154 45274 (4216) + TguERVL2_I-b_fAlb LTR/ERVL 984 2067 (5) 33 59 36.5 2.8 6.5 galGal6_dna 45650 46001 (3489) + TguERVL2_I-b_fAlb LTR/ERVL 1975 2314 (3733) 33 69 42.2 2.0 2.7 galGal6_dna 46076 46649 (2841) + TguERVL2_I-b_fAlb LTR/ERVL 2766 3438 (2319) 33 100 42.9 6.8 9.0 galGal6_dna 46860 47878 (1612) + TguERVL2_I-b_fAlb LTR/ERVL 3659 4656 (1101) 33