+ 2393 5.7 0.9 0.0 UnnamedSequence 26 340 (8660) + RLTR10 LTR/ERVK 1 318 (72) 1
ANNOTATION EVIDENCE:
2393 5.71 0.95 0.00 UnnamedSequence 26 340 8660 + RLTR10 LTR/ERVK 1 318 72
2393 5.71 0.95 0.00 UnnamedSequence 26 340 (8660) RLTR10#LTR/ERVK 1 318 (72) m_b1s501i0
UnnamedSequen 26 TGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGAGACTGCAGCT 75
i
RLTR10#LTR/ER 1 TGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGGGACTGCAGCT 50
UnnamedSequen 76 AAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTG 125
RLTR10#LTR/ER 51 AAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTG 100
UnnamedSequen 126 AGAGCTGCGCAGGTGCACCAGGATACCGGTGAATCCAATTTGGTGGAGAT 175
v i v
RLTR10#LTR/ER 101 AGTGCTGCGCAGGTGTACCAGGATACAGGTGAATCCAATTTGGTGGAGAT 150
UnnamedSequen 176 TTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGACTGGCGAGGGGGCG 225
v i v
RLTR10#LTR/ER 151 TTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTGAGGTGGCG 200
UnnamedSequen 226 TGGCCTGCGGTGCGTGGATGAGA---GAGAGTATAAAAGGAGTGAGAGGC 272
v i --- ?
RLTR10#LTR/ER 201 TGGCCTGCTGTGCGTGGATGGGAACTGAGAGTATAAAAGNAGTGAGAGGC 250
UnnamedSequen 273 CCAGGGTTCGGGGGAGATATAAAAACAAGGGAGATAAAAACAAGGGAGAT 322
v
RLTR10#LTR/ER 251 CCAGGGTTCGGGGGAGATATAAAAACAAGGGAGATATAAACAAGGGAGAT 300
UnnamedSequen 323 ATAAAAACAAGGGAGATA 340
i i v iii i i
RLTR10#LTR/ER 301 ATAGAGAAAGAAGAAACA 318
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 5.99
Transitions / transversions = 1.57 (11/7)
Gap_init rate = 0.00 (1 / 314), avg. gap size = 3.00 (3 / 1)
+ 966 9.6 3.2 0.6 UnnamedSequence 369 526 (8474) + RLTR10 LTR/ERVK 227 388 (2) 2
ANNOTATION EVIDENCE:
966 9.55 3.16 0.62 UnnamedSequence 369 526 8474 + RLTR10 LTR/ERVK 227 388 2
966 9.55 3.16 0.62 UnnamedSequence 369 526 (8474) RLTR10#LTR/ERVK 227 388 (2) m_b1s501i1
UnnamedSequen 369 GAGA-TATAAAAACAAGGGAGATATATAAA---CAAGGGAGATATAAAAA 414
- i? - v viivi ii--- ii
RLTR10#LTR/ER 227 GAGAGTATAAAAGNA-GTGAGAGGCCCAGGGTTCGGGGGAGATATAAAAA 275
UnnamedSequen 415 CAAGGGAGATATAAACAAGGGAGATATAAA-CAAGAAGAAACAGGACTGA 463
i -v
RLTR10#LTR/ER 276 CAAGGGAGATATAAACAAGGGAGATATAGAGAAAGAAGAAACAGGACTGA 325
UnnamedSequen 464 ATAAATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCTGT 513
i v
RLTR10#LTR/ER 326 ATAAACGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCAGT 375
UnnamedSequen 514 TGAGCGCGCGCAA 526
RLTR10#LTR/ER 376 TGAGCGCGCGCAA 388
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 9.03
Transitions / transversions = 2.00 (10/5)
Gap_init rate = 0.03 (4 / 157), avg. gap size = 1.50 (6 / 4)
+ 4133 3.9 0.1 0.2 UnnamedSequence 530 1424 (7576) + RLTR10-int LTR/ERVK 2 998 (989) 2
ANNOTATION EVIDENCE:
283 20.76 5.06 2.47 UnnamedSequence 530 608 8392 + IAPEY5_I LTR/ERVK 2 82 3492
283 20.76 5.06 2.47 UnnamedSequence 530 608 (8392) IAPEY5_I#LTR/ERVK 2 82 (3492) m_b1s701i0
UnnamedSequen 530 TTGGTGCTGAAACCCGGGAAAAGA---AACATCTTCAGTCACGAGCGAAG 576
i i vv v--- v vi i ivv --i
IAPEY5_I#LTR/ 2 TTGGCGCCGAAACCCGGGAACTGCCTTACCATCGCCGGCGCCGAG--GAG 49
UnnamedSequen 577 ACCCCCTGCT-ACAGGGAGGATTCAGAACTGCA 608
i -i i
IAPEY5_I#LTR/ 50 ACCCCCCGCTCGCGGGGAGGATTCAGAACTGCA 82
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 13.80
Transitions / transversions = 1.29 (9/7)
Gap_init rate = 0.05 (4 / 78), avg. gap size = 1.50 (6 / 4)
3659 2.29 0.00 0.00 UnnamedSequence 539 975 8025 + RLTR10-int LTR/ERVK 41 477 1510
3659 2.29 0.00 0.00 UnnamedSequence 539 975 (8025) RLTR10-int#LTR/ERVK 41 477 (1510) m_b1s701i1
UnnamedSequen 539 AAACCCGGGAAAAGAAACATCTTCAGTCACGAGCGAAGACCCCCTGCTAC 588
v
RLTR10-int#LT 41 AAACCCGGGAAAAGAAACATCTTCAGGCACGAGCGAAGACCCCCTGCTAC 90
UnnamedSequen 589 AGGGAGGATTCAGAACTGCATAACGGGGAAGAAGGGGTTAATAAAGTGTT 638
v i v i
RLTR10-int#LT 91 AGGGAGGATTCAGAACTGCATCACGGGGAAGGAGCGGTTAATAAAGCGTT 140
UnnamedSequen 639 CCCGTAAAACAGACTGTTGAGAAGGATCCGGCGTGGATTCAGAACTCTTC 688
RLTR10-int#LT 141 CCCGTAAAACAGACTGTTGAGAAGGATCCGGCGTGGATTCAGAACTCTTC 190
UnnamedSequen 689 AGCTGGGGAACGGTACTGATGAAGAGAAAGAAGAAAGATGAAGACTGAAT 738
RLTR10-int#LT 191 AGCTGGGGAACGGTACTGATGAAGAGAAAGAAGAAAGATGAAGACTGAAT 240
UnnamedSequen 739 AAACTGCTGTTAGAAGGACTGGTGGTCGCGTCGTTCTTGCTGGTCGAGAG 788
RLTR10-int#LT 241 AAACTGCTGTTAGAAGGACTGGTGGTCGCGTCGTTCTTGCTGGTCGAGAG 290
UnnamedSequen 789 CGGGCGCGACAATTGGTGGCCCGTACGGGGAACCGACTCCCCCACCGAGT 838
RLTR10-int#LT 291 CGGGCGCGACAATTGGTGGCCCGTACGGGGAACCGACTCCCCCACCGAGT 340
UnnamedSequen 839 TCAGAACTTTCAGCAGTCAGTGGTTGCCGGCAGGGTAAGTTCACGGTGAG 888
RLTR10-int#LT 341 TCAGAACTTTCAGCAGTCAGTGGTTGCCGGCAGGGTAAGTTCACGGTGAG 390
UnnamedSequen 889 TGAAACTTGCAACCCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGG 938
i
RLTR10-int#LT 391 TGAAACTTGCGACCCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGG 440
UnnamedSequen 939 CAAGCATAAAGTTGCCAGGAAGCAGGCACAAGGTAAC 975
ii i i
RLTR10-int#LT 441 TGAGCATAAAGTTGCCAGGAAGTAGGCACAAAGTAAC 477
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 1.90
Transitions / transversions = 2.33 (7/3)
Gap_init rate = 0.00 (0 / 436), avg. gap size = 0.0 (0 / 0)
4133 5.18 0.19 0.38 UnnamedSequence 902 1424 7576 + RLTR10-int LTR/ERVK 477 998 989
4133 5.18 0.19 0.38 UnnamedSequence 902 1424 (7576) RLTR10-int#LTR/ERVK 477 998 (989) m_b1s701i2
UnnamedSequen 902 CCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGGCAAGCATAAAGTT 951
i
RLTR10-int#LT 477 CCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGGCGAGCATAAAGTT 526
UnnamedSequen 952 GCCAGGAAGCAGGCACAAGGTAACAAAAGGTTCCTGGTTTTGGGATAAGT 1001
i i i i
RLTR10-int#LT 527 GCCAGGAAGCAGGCACAAGGTAACGAAAGGTTCCCGGCTTTGGGACAAGT 576
UnnamedSequen 1002 TAAGGTTCACGGTTTCAGGATAGATTAAGGAACTATGATAACCTCAGTGT 1051
v vi i ii
RLTR10-int#LT 577 TAAGGTTCCCGGTTTGGGGACAAGTTAAGGAACTATGATAACCTCAGTGT 626
UnnamedSequen 1052 AGTGATCAATAGATCCTCGCTGTGTAGTTATGCTTTTTTCTCCCATTGAC 1101
RLTR10-int#LT 627 AGTGATCAATAGATCCTCGCTGTGTAGTTATGCTTTTTTCTCCCATTGAC 676
UnnamedSequen 1102 CCTTTGTGGGTAGGTCTGATAGTTTTGGTCTTGTTTGTTCTGATATATGG 1151
RLTR10-int#LT 677 CCTTTGTGGGTAGGTCTGATAGTTTTGGTCTTGTTTGTTCTGATATATGG 726
UnnamedSequen 1152 ACTCTGTTACTGTTTGAAACTGTGTGTAGAGGCAGTCAAGACAGGTCAGA 1201
RLTR10-int#LT 727 ACTCTGTTACTGTTTGAAACTGTGTGTAGAGGCAGTCAAGACAGGTCAGA 776
UnnamedSequen 1202 AAATCCTTATAGAGCAACAAGAAAATATGTCGGAAGAGGAGAAGGGCTTA 1251
i i
RLTR10-int#LT 777 AAATCCTTACAGAGCAACAAGAAAGTATGTCGGAAGAGGAGAAGGGCTTA 826
UnnamedSequen 1252 AAAAGAAAAAGGAAAAAGAAAGGAGACACAGTGTTATCAGGTGGACAGAA 1301
RLTR10-int#LT 827 AAAAGAAAAAGGAAAAAGAAAGGAGACACAGTGTTATCAGGTGGACAGAA 876
UnnamedSequen 1302 AGGACAGGACAACAGAGTCGAGGCGGAGGAGG-AGGTGAATTAGCTTCTG 1350
ii i v i - i
RLTR10-int#LT 877 AGGACAAAATAAAAGAGCCGAGGCGGAGGAGGAAGGCGAATTAGCTTCTG 926
UnnamedSequen 1351 CTCCCCCTCCCTATGCCTCCTCAGCAGCCATCTATGGGCAGACCTTCTGT 1400
v i i i i i
RLTR10-int#LT 927 CGCCCCCTCCCTATGCCTCCTCGGCAGCCACCTGTAGGCGGACCTTCTGT 976
UnnamedSequen 1401 CCGGAGGTCTGGAAAGAGGATAGA 1424
i -- v
RLTR10-int#LT 977 CCGGAGGTTTGG--AGAGGATCGA 998
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 4.29
Transitions / transversions = 4.40 (22/5)
Gap_init rate = 0.01 (3 / 522), avg. gap size = 1.00 (3 / 3)
+ 811 12.2 0.7 0.7 UnnamedSequence 1470 1618 (7382) + RLTR10-int LTR/ERVK 983 1131 (5025) 2
ANNOTATION EVIDENCE:
811 12.16 0.67 0.67 UnnamedSequence 1470 1618 7382 + MMERVK10D3_I LTR/ERVK 983 1131 5025
811 12.16 0.67 0.67 UnnamedSequence 1470 1618 (7382) MMERVK10D3_I#LTR/ERVK 983 1131 (5025) m_b1s701i3
UnnamedSequen 1470 GCATGGGATAGAGATATGCTGCTTGATCAAGGTAGATTTG-CACAACAAC 1518
? i ? i ?v ? - i i -
MMERVK10D3_I# 983 GCNTGGGATAGGGATATGCTGCTNGGTCAAGGNCGNTTTGCCGCAGC-AC 1031
UnnamedSequen 1519 AGACAGGATATCCAGTGCAGGTGTTTGAGCAGGTGAATCAGATTGCCATA 1568
i ? ? ? v i ? ? ? i?
MMERVK10D3_I# 1032 AGACAAGNTATCCNGTGCAGGTNTATGAGCAGATNAATNAGATNGCCACN 1081
UnnamedSequen 1569 AGGGCGTGGAAATCATTGCCCAACAGAGGGGAAGCTAGTGAAAACTTGAC 1618
? i? ii ? i iii ? iv
MMERVK10D3_I# 1082 AGGGCNTGGAAGNCGCTGCCNAACAGAGGAGAAGTCGGNGGCAACTTGAC 1131
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 12.69
Transitions / transversions = 5.00 (15/3)
Gap_init rate = 0.01 (2 / 148), avg. gap size = 1.00 (2 / 2)
+ 8567 2.1 0.0 0.1 UnnamedSequence 1700 2698 (6302) + RLTR10-int LTR/ERVK 990 1987 (0) 3
ANNOTATION EVIDENCE:
8567 2.10 0.00 0.10 UnnamedSequence 1700 2698 6302 + RLTR10-int LTR/ERVK 990 1987 0
8567 2.10 0.00 0.10 UnnamedSequence 1700 2698 (6302) RLTR10-int#LTR/ERVK 990 1987 (0) m_b1s701i4
UnnamedSequen 1700 GGGGATCGACCAGATCAGGTGTTGACGTGGGCGAGAGGGTCTGTTTGTGT 1749
i
RLTR10-int#LT 990 GAGGATCGACCAGATCAGGTGTTGACGTGGGCGAGAGGGTCTGTTTGTGT 1039
UnnamedSequen 1750 GTTTCCACAGGACCAGACTGAACCTCTTTGGGTGCCGGAGAGATTGGTGA 1799
v
RLTR10-int#LT 1040 GTTTCCACAGGACCAGACGGAACCTCTTTGGGTGCCGGAGAGATTGGTGA 1089
UnnamedSequen 1800 GACGCTGCAAGAATGAGGCTCCTGATCCAGTTGCCCCTGTGGATGTGGTG 1849
RLTR10-int#LT 1090 GACGCTGCAAGAATGAGGCTCCTGATCCAGTTGCCCCTGTGGATGTGGTG 1139
UnnamedSequen 1850 GATGATCCCACAAGCACAAAGGATGGAGCCGAGATGAGAGATCCTTTTGG 1899
i i
RLTR10-int#LT 1140 GATGATCCCACAAGCACAAAGGATGGAGCCGAGATGGGAGATCCTTTCGG 1189
UnnamedSequen 1900 TATTCCAGAAGCCGATACCAGCTCGACATGACATTCAAATTTTTCCATGC 1949
i
RLTR10-int#LT 1190 TATTCCAGAAGCCGATACCAGCTCGACATGACATTCAAATTTTTCCACGC 1239
UnnamedSequen 1950 TTTTTGATCCCTGAATTTCCCTTAAAGAAATAGCCCCTCTGGCTATCTAT 1999
i i i
RLTR10-int#LT 1240 TTTTTGATCCCTGAATTCCCCTTAAAGAGATAGCCCCTCTGGCCATCTAT 1289
UnnamedSequen 2000 CCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGATGTATGCT 2049
RLTR10-int#LT 1290 CCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGATGTATGCT 1339
UnnamedSequen 2050 TGTTATAGTGCGTGTGCGTTGTGTGTTTGGCACATGTGTTAGGTGCAGAG 2099
i i v
RLTR10-int#LT 1340 TGTTATAGTGTGTGTGTGTTTTGTGTTTGGCACATGTGTTAGGTGCAGAG 1389
UnnamedSequen 2100 TGTGCAGGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTGCAGTGG 2149
-
RLTR10-int#LT 1390 TGTGC-GGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTGCAGTGG 1438
UnnamedSequen 2150 AGGCGGGACAATCTCCTCAGATTCGGTTTGCTGCTCTAAAAGAAATTATG 2199
i
RLTR10-int#LT 1439 AGGCGGGACAATCTCCTCAGATTCGGTTTGCCGCTCTAAAAGAAATTATG 1488
UnnamedSequen 2200 CTGCGTTATGCCGTGGGTTGCGAGGCTAAGCACTGCACAGAGGATAGCTT 2249
v
RLTR10-int#LT 1489 CTGCGTTATGCCGTGGGGTGCGAGGCTAAGCACTGCACAGAGGATAGCTT 1538
UnnamedSequen 2250 GCTGTTGGCATCCTGTGGAAGGCACGTCTGATTGCATGAAGGTTCAGTGT 2299
RLTR10-int#LT 1539 GCTGTTGGCATCCTGTGGAAGGCACGTCTGATTGCATGAAGGTTCAGTGT 1588
UnnamedSequen 2300 CCTAGTTCCCTTCCCCCAGGAAAAACGACACAGGAGCTGGCCAAGACCTC 2349
i
RLTR10-int#LT 1589 CCTAGTTCCCTTCCCCCAGGAAAAACGACACGGGAGCTGGCCAAGACCTC 1638
UnnamedSequen 2350 TCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTATGCTTGC 2399
RLTR10-int#LT 1639 TCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTATGCTTGC 1688
UnnamedSequen 2400 ACACTGGGGATCAGACCTCTACCTTCACCCATGAGGCTTGCTTGCAGCAA 2449
RLTR10-int#LT 1689 ACACTGGGGATCAGACCTCTACCTTCACCCATGAGGCTTGCTTGCAGCAA 1738
UnnamedSequen 2450 TTAAGATCTGGCCATAGATTAATCAACATCCTGGCCTTTTGATGCACCTG 2499
i i
RLTR10-int#LT 1739 TTAAGATCTGGCCATAGGTTAATTAACATCCTGGCCTTTTGATGCACCTG 1788
UnnamedSequen 2500 CCGCAAGCAAAACACAATCTCCCCAGGAGTGGCTTGGCATAATAGAGAGG 2549
? i
RLTR10-int#LT 1789 CCGCAAGCAAAACACAATCTCCCCAGGNGTGGCTTGGCATGATAGAGAGG 1838
UnnamedSequen 2550 TAGTCAGTGATAAGACTCCCTGGGCATGTCACCAACCTAAGACAGGGATC 2599
RLTR10-int#LT 1839 TAGTCAGTGATAAGACTCCCTGGGCATGTCACCAACCTAAGACAGGGATC 1888
UnnamedSequen 2600 AAACCAATGCTGTTTGTCACCCAAGGACGGGTAAGGGGCATGGCTGCGAG 2649
i
RLTR10-int#LT 1889 AAACCAATGCTGTTTGTCACCCAAGGACGGGTAAGGGGCATGGCTGCGGG 1938
UnnamedSequen 2650 GGGCTATCTACAGACATTCTCTCTGCCAAAAAAGAAAAAAAGGGGGAAT 2698
i ii
RLTR10-int#LT 1939 GGGCTATCTACAGACATTCTCTCTGCCAAAAAAGAAAAAAGGGGGAGAT 1987
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 1.77
Transitions / transversions = 6.00 (18/3)
Gap_init rate = 0.00 (1 / 998), avg. gap size = 1.00 (1 / 1)
+ 2393 5.7 0.9 0.0 UnnamedSequence 2699 3013 (5987) + RLTR10 LTR/ERVK 1 318 (72) 3
ANNOTATION EVIDENCE:
2393 5.71 0.95 0.00 UnnamedSequence 2699 3013 5987 + RLTR10 LTR/ERVK 1 318 72
2393 5.71 0.95 0.00 UnnamedSequence 2699 3013 (5987) RLTR10#LTR/ERVK 1 318 (72) m_b1s501i2
UnnamedSequen 2699 TGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGAGACTGCAGCT 2748
i
RLTR10#LTR/ER 1 TGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGGGACTGCAGCT 50
UnnamedSequen 2749 AAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTG 2798
RLTR10#LTR/ER 51 AAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTG 100
UnnamedSequen 2799 AGAGCTGCGCAGGTGCACCAGGATACCGGTGAATCCAATTTGGTGGAGAT 2848
v i v
RLTR10#LTR/ER 101 AGTGCTGCGCAGGTGTACCAGGATACAGGTGAATCCAATTTGGTGGAGAT 150
UnnamedSequen 2849 TTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGACTGGCGAGGGGGCG 2898
v i v
RLTR10#LTR/ER 151 TTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTGAGGTGGCG 200
UnnamedSequen 2899 TGGCCTGCGGTGCGTGGATGAGA---GAGAGTATAAAAGGAGTGAGAGGC 2945
v i --- ?
RLTR10#LTR/ER 201 TGGCCTGCTGTGCGTGGATGGGAACTGAGAGTATAAAAGNAGTGAGAGGC 250
UnnamedSequen 2946 CCAGGGTTCGGGGGAGATATAAAAACAAGGGAGATAAAAACAAGGGAGAT 2995
v
RLTR10#LTR/ER 251 CCAGGGTTCGGGGGAGATATAAAAACAAGGGAGATATAAACAAGGGAGAT 300
UnnamedSequen 2996 ATAAAAACAAGGGAGATA 3013
i i v iii i i
RLTR10#LTR/ER 301 ATAGAGAAAGAAGAAACA 318
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 5.99
Transitions / transversions = 1.57 (11/7)
Gap_init rate = 0.00 (1 / 314), avg. gap size = 3.00 (3 / 1)
+ 966 9.6 3.2 0.6 UnnamedSequence 3042 3199 (5801) + RLTR10 LTR/ERVK 227 388 (2) 4
ANNOTATION EVIDENCE:
966 9.55 3.16 0.62 UnnamedSequence 3042 3199 5801 + RLTR10 LTR/ERVK 227 388 2
966 9.55 3.16 0.62 UnnamedSequence 3042 3199 (5801) RLTR10#LTR/ERVK 227 388 (2) m_b1s501i3
UnnamedSequen 3042 GAGA-TATAAAAACAAGGGAGATATATAAA---CAAGGGAGATATAAAAA 3087
- i? - v viivi ii--- ii
RLTR10#LTR/ER 227 GAGAGTATAAAAGNA-GTGAGAGGCCCAGGGTTCGGGGGAGATATAAAAA 275
UnnamedSequen 3088 CAAGGGAGATATAAACAAGGGAGATATAAA-CAAGAAGAAACAGGACTGA 3136
i -v
RLTR10#LTR/ER 276 CAAGGGAGATATAAACAAGGGAGATATAGAGAAAGAAGAAACAGGACTGA 325
UnnamedSequen 3137 ATAAATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCTGT 3186
i v
RLTR10#LTR/ER 326 ATAAACGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCAGT 375
UnnamedSequen 3187 TGAGCGCGCGCAA 3199
RLTR10#LTR/ER 376 TGAGCGCGCGCAA 388
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 9.03
Transitions / transversions = 2.00 (10/5)
Gap_init rate = 0.03 (4 / 157), avg. gap size = 1.50 (6 / 4)
+ 4118 4.0 0.1 0.2 UnnamedSequence 3203 4097 (4903) + RLTR10-int LTR/ERVK 2 998 (989) 4
ANNOTATION EVIDENCE:
283 20.76 5.06 2.47 UnnamedSequence 3203 3281 5719 + IAPEY5_I LTR/ERVK 2 82 3492
283 20.76 5.06 2.47 UnnamedSequence 3203 3281 (5719) IAPEY5_I#LTR/ERVK 2 82 (3492) m_b1s701i5
UnnamedSequen 3203 TTGGTGCTGAAACCCGGGAAAAGA---AACATCTTCAGTCACGAGCGAAG 3249
i i vv v--- v vi i ivv --i
IAPEY5_I#LTR/ 2 TTGGCGCCGAAACCCGGGAACTGCCTTACCATCGCCGGCGCCGAG--GAG 49
UnnamedSequen 3250 ACCCCCTGCT-ACAGGGAGGATTCAGAACTGCA 3281
i -i i
IAPEY5_I#LTR/ 50 ACCCCCCGCTCGCGGGGAGGATTCAGAACTGCA 82
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 13.80
Transitions / transversions = 1.29 (9/7)
Gap_init rate = 0.05 (4 / 78), avg. gap size = 1.50 (6 / 4)
3649 2.29 0.00 0.00 UnnamedSequence 3212 3647 5353 + RLTR10-int LTR/ERVK 41 476 1511
3649 2.29 0.00 0.00 UnnamedSequence 3212 3647 (5353) RLTR10-int#LTR/ERVK 41 476 (1511) m_b1s701i6
UnnamedSequen 3212 AAACCCGGGAAAAGAAACATCTTCAGTCACGAGCGAAGACCCCCTGCTAC 3261
v
RLTR10-int#LT 41 AAACCCGGGAAAAGAAACATCTTCAGGCACGAGCGAAGACCCCCTGCTAC 90
UnnamedSequen 3262 AGGGAGGATTCAGAACTGCATAACGGGGAAGAAGGGGTTAATAAAGTGTT 3311
v i v i
RLTR10-int#LT 91 AGGGAGGATTCAGAACTGCATCACGGGGAAGGAGCGGTTAATAAAGCGTT 140
UnnamedSequen 3312 CCCGTAAAACAGACTGTTGAGAAGGATCCGGCGTGGATTCAGAACTCTTC 3361
RLTR10-int#LT 141 CCCGTAAAACAGACTGTTGAGAAGGATCCGGCGTGGATTCAGAACTCTTC 190
UnnamedSequen 3362 AGCTGGGGAACGGTACTGATGAAGAGAAAGAAGAAAGATGAAGACTGAAT 3411
RLTR10-int#LT 191 AGCTGGGGAACGGTACTGATGAAGAGAAAGAAGAAAGATGAAGACTGAAT 240
UnnamedSequen 3412 AAACTGCTGTTAGAAGGACTGGTGGTCGCGTCGTTCTTGCTGGTCGAGAG 3461
RLTR10-int#LT 241 AAACTGCTGTTAGAAGGACTGGTGGTCGCGTCGTTCTTGCTGGTCGAGAG 290
UnnamedSequen 3462 CGGGCGCGACAATTGGTGGCCCGTACGGGGAACCGACTCCCCCACCGAGT 3511
RLTR10-int#LT 291 CGGGCGCGACAATTGGTGGCCCGTACGGGGAACCGACTCCCCCACCGAGT 340
UnnamedSequen 3512 TCAGAACTTTCAGCAGTCAGTGGTTGCCGGCAGGGTAAGTTCACGGTGAG 3561
RLTR10-int#LT 341 TCAGAACTTTCAGCAGTCAGTGGTTGCCGGCAGGGTAAGTTCACGGTGAG 390
UnnamedSequen 3562 TGAAACTTGCAACCCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGG 3611
i
RLTR10-int#LT 391 TGAAACTTGCGACCCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGG 440
UnnamedSequen 3612 CAAGCATAAAGTTGCCAGGAAGCAGGCACAAGGTAA 3647
ii i i
RLTR10-int#LT 441 TGAGCATAAAGTTGCCAGGAAGTAGGCACAAAGTAA 476
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 1.91
Transitions / transversions = 2.33 (7/3)
Gap_init rate = 0.00 (0 / 435), avg. gap size = 0.0 (0 / 0)
4118 5.37 0.19 0.38 UnnamedSequence 3575 4097 4903 + RLTR10-int LTR/ERVK 477 998 989
4118 5.37 0.19 0.38 UnnamedSequence 3575 4097 (4903) RLTR10-int#LTR/ERVK 477 998 (989) m_b1s701i7
UnnamedSequen 3575 CCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGGCAAGCATAAAGTT 3624
i
RLTR10-int#LT 477 CCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGGCGAGCATAAAGTT 526
UnnamedSequen 3625 GCCAGGAAGCAGGCACAAGGTAATAAAAGGTTCCTGGTTTTGGGATAAGT 3674
ii i i i
RLTR10-int#LT 527 GCCAGGAAGCAGGCACAAGGTAACGAAAGGTTCCCGGCTTTGGGACAAGT 576
UnnamedSequen 3675 TAAGGTTCACGGTTTCAGGATAGATTAAGGAACTATGATAACCTCAGTGT 3724
v vi i ii
RLTR10-int#LT 577 TAAGGTTCCCGGTTTGGGGACAAGTTAAGGAACTATGATAACCTCAGTGT 626
UnnamedSequen 3725 AGTGATCAATAGATCCTCGCTGTGTAGTTATGCTTTTTTCTCCCATTGAC 3774
RLTR10-int#LT 627 AGTGATCAATAGATCCTCGCTGTGTAGTTATGCTTTTTTCTCCCATTGAC 676
UnnamedSequen 3775 CCTTTGTGGGTAGGTCTGATAGTTTTGGTCTTGTTTGTTCTGATATATGG 3824
RLTR10-int#LT 677 CCTTTGTGGGTAGGTCTGATAGTTTTGGTCTTGTTTGTTCTGATATATGG 726
UnnamedSequen 3825 ACTCTGTTACTGTTTGAAACTGTGTGTAGAGGCAGTCAAGACAGGTCAGA 3874
RLTR10-int#LT 727 ACTCTGTTACTGTTTGAAACTGTGTGTAGAGGCAGTCAAGACAGGTCAGA 776
UnnamedSequen 3875 AAATCCTTATAGAGCAACAAGAAAATATGTCGGAAGAGGAGAAGGGCTTA 3924
i i
RLTR10-int#LT 777 AAATCCTTACAGAGCAACAAGAAAGTATGTCGGAAGAGGAGAAGGGCTTA 826
UnnamedSequen 3925 AAAAGAAAAAGGAAAAAGAAAGGAGACACAGTGTTATCAGGTGGACAGAA 3974
RLTR10-int#LT 827 AAAAGAAAAAGGAAAAAGAAAGGAGACACAGTGTTATCAGGTGGACAGAA 876
UnnamedSequen 3975 AGGACAGGACAACAGAGTCGAGGCGGAGGAGG-AGGTGAATTAGCTTCTG 4023
ii i v i - i
RLTR10-int#LT 877 AGGACAAAATAAAAGAGCCGAGGCGGAGGAGGAAGGCGAATTAGCTTCTG 926
UnnamedSequen 4024 CTCCCCCTCCCTATGCCTCCTCAGCAGCCATCTATGGGCAGACCTTCTGT 4073
v i i i i i
RLTR10-int#LT 927 CGCCCCCTCCCTATGCCTCCTCGGCAGCCACCTGTAGGCGGACCTTCTGT 976
UnnamedSequen 4074 CCGGAGGTCTGGAAAGAGGATAGA 4097
i -- v
RLTR10-int#LT 977 CCGGAGGTTTGG--AGAGGATCGA 998
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 4.48
Transitions / transversions = 4.60 (23/5)
Gap_init rate = 0.01 (3 / 522), avg. gap size = 1.00 (3 / 3)
+ 811 12.2 0.7 0.7 UnnamedSequence 4143 4291 (4709) + RLTR10-int LTR/ERVK 983 1131 (5025) 4
ANNOTATION EVIDENCE:
811 12.16 0.67 0.67 UnnamedSequence 4143 4291 4709 + MMERVK10D3_I LTR/ERVK 983 1131 5025
811 12.16 0.67 0.67 UnnamedSequence 4143 4291 (4709) MMERVK10D3_I#LTR/ERVK 983 1131 (5025) m_b1s701i8
UnnamedSequen 4143 GCATGGGATAGAGATATGCTGCTTGATCAAGGTAGATTTG-CACAACAAC 4191
? i ? i ?v ? - i i -
MMERVK10D3_I# 983 GCNTGGGATAGGGATATGCTGCTNGGTCAAGGNCGNTTTGCCGCAGC-AC 1031
UnnamedSequen 4192 AGACAGGATATCCAGTGCAGGTGTTTGAGCAGGTGAATCAGATTGCCATA 4241
i ? ? ? v i ? ? ? i?
MMERVK10D3_I# 1032 AGACAAGNTATCCNGTGCAGGTNTATGAGCAGATNAATNAGATNGCCACN 1081
UnnamedSequen 4242 AGGGCGTGGAAATCATTGCCCAACAGAGGGGAAGCTAGTGAAAACTTGAC 4291
? i? ii ? i iii ? iv
MMERVK10D3_I# 1082 AGGGCNTGGAAGNCGCTGCCNAACAGAGGAGAAGTCGGNGGCAACTTGAC 1131
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 12.69
Transitions / transversions = 5.00 (15/3)
Gap_init rate = 0.01 (2 / 148), avg. gap size = 1.00 (2 / 2)
+ 8567 2.1 0.0 0.1 UnnamedSequence 4373 5371 (3629) + RLTR10-int LTR/ERVK 990 1987 (0) 5
ANNOTATION EVIDENCE:
8567 2.10 0.00 0.10 UnnamedSequence 4373 5371 3629 + RLTR10-int LTR/ERVK 990 1987 0
8567 2.10 0.00 0.10 UnnamedSequence 4373 5371 (3629) RLTR10-int#LTR/ERVK 990 1987 (0) m_b1s701i9
UnnamedSequen 4373 GGGGATCGACCAGATCAGGTGTTGACGTGGGCGAGAGGGTCTGTTTGTGT 4422
i
RLTR10-int#LT 990 GAGGATCGACCAGATCAGGTGTTGACGTGGGCGAGAGGGTCTGTTTGTGT 1039
UnnamedSequen 4423 GTTTCCACAGGACCAGACTGAACCTCTTTGGGTGCCGGAGAGATTGGTGA 4472
v
RLTR10-int#LT 1040 GTTTCCACAGGACCAGACGGAACCTCTTTGGGTGCCGGAGAGATTGGTGA 1089
UnnamedSequen 4473 GACGCTGCAAGAATGAGGCTCCTGATCCAGTTGCCCCTGTGGATGTGGTG 4522
RLTR10-int#LT 1090 GACGCTGCAAGAATGAGGCTCCTGATCCAGTTGCCCCTGTGGATGTGGTG 1139
UnnamedSequen 4523 GATGATCCCACAAGCACAAAGGATGGAGCCGAGATGAGAGATCCTTTTGG 4572
i i
RLTR10-int#LT 1140 GATGATCCCACAAGCACAAAGGATGGAGCCGAGATGGGAGATCCTTTCGG 1189
UnnamedSequen 4573 TATTCCAGAAGCCGATACCAGCTCGACATGACATTCAAATTTTTCCATGC 4622
i
RLTR10-int#LT 1190 TATTCCAGAAGCCGATACCAGCTCGACATGACATTCAAATTTTTCCACGC 1239
UnnamedSequen 4623 TTTTTGATCCCTGAATTTCCCTTAAAGAAATAGCCCCTCTGGCTATCTAT 4672
i i i
RLTR10-int#LT 1240 TTTTTGATCCCTGAATTCCCCTTAAAGAGATAGCCCCTCTGGCCATCTAT 1289
UnnamedSequen 4673 CCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGATGTATGCT 4722
RLTR10-int#LT 1290 CCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGATGTATGCT 1339
UnnamedSequen 4723 TGTTATAGTGCGTGTGCGTTGTGTGTTTGGCACATGTGTTAGGTGCAGAG 4772
i i v
RLTR10-int#LT 1340 TGTTATAGTGTGTGTGTGTTTTGTGTTTGGCACATGTGTTAGGTGCAGAG 1389
UnnamedSequen 4773 TGTGCAGGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTGCAGTGG 4822
-
RLTR10-int#LT 1390 TGTGC-GGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTGCAGTGG 1438
UnnamedSequen 4823 AGGCGGGACAATCTCCTCAGATTCGGTTTGCTGCTCTAAAAGAAATTATG 4872
i
RLTR10-int#LT 1439 AGGCGGGACAATCTCCTCAGATTCGGTTTGCCGCTCTAAAAGAAATTATG 1488
UnnamedSequen 4873 CTGCGTTATGCCGTGGGTTGCGAGGCTAAGCACTGCACAGAGGATAGCTT 4922
v
RLTR10-int#LT 1489 CTGCGTTATGCCGTGGGGTGCGAGGCTAAGCACTGCACAGAGGATAGCTT 1538
UnnamedSequen 4923 GCTGTTGGCATCCTGTGGAAGGCACGTCTGATTGCATGAAGGTTCAGTGT 4972
RLTR10-int#LT 1539 GCTGTTGGCATCCTGTGGAAGGCACGTCTGATTGCATGAAGGTTCAGTGT 1588
UnnamedSequen 4973 CCTAGTTCCCTTCCCCCAGGAAAAACGACACAGGAGCTGGCCAAGACCTC 5022
i
RLTR10-int#LT 1589 CCTAGTTCCCTTCCCCCAGGAAAAACGACACGGGAGCTGGCCAAGACCTC 1638
UnnamedSequen 5023 TCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTATGCTTGC 5072
RLTR10-int#LT 1639 TCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTATGCTTGC 1688
UnnamedSequen 5073 ACACTGGGGATCAGACCTCTACCTTCACCCATGAGGCTTGCTTGCAGCAA 5122
RLTR10-int#LT 1689 ACACTGGGGATCAGACCTCTACCTTCACCCATGAGGCTTGCTTGCAGCAA 1738
UnnamedSequen 5123 TTAAGATCTGGCCATAGATTAATCAACATCCTGGCCTTTTGATGCACCTG 5172
i i
RLTR10-int#LT 1739 TTAAGATCTGGCCATAGGTTAATTAACATCCTGGCCTTTTGATGCACCTG 1788
UnnamedSequen 5173 CCGCAAGCAAAACACAATCTCCCCAGGAGTGGCTTGGCATAATAGAGAGG 5222
? i
RLTR10-int#LT 1789 CCGCAAGCAAAACACAATCTCCCCAGGNGTGGCTTGGCATGATAGAGAGG 1838
UnnamedSequen 5223 TAGTCAGTGATAAGACTCCCTGGGCATGTCACCAACCTAAGACAGGGATC 5272
RLTR10-int#LT 1839 TAGTCAGTGATAAGACTCCCTGGGCATGTCACCAACCTAAGACAGGGATC 1888
UnnamedSequen 5273 AAACCAATGCTGTTTGTCACCCAAGGACGGGTAAGGGGCATGGCTGCGAG 5322
i
RLTR10-int#LT 1889 AAACCAATGCTGTTTGTCACCCAAGGACGGGTAAGGGGCATGGCTGCGGG 1938
UnnamedSequen 5323 GGGCTATCTACAGACATTCTCTCTGCCAAAAAAGAAAAAAAGGGGGAAT 5371
i ii
RLTR10-int#LT 1939 GGGCTATCTACAGACATTCTCTCTGCCAAAAAAGAAAAAAGGGGGAGAT 1987
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 1.77
Transitions / transversions = 6.00 (18/3)
Gap_init rate = 0.00 (1 / 998), avg. gap size = 1.00 (1 / 1)
+ 2393 5.7 0.9 0.0 UnnamedSequence 5372 5686 (3314) + RLTR10 LTR/ERVK 1 318 (72) 5
ANNOTATION EVIDENCE:
2393 5.71 0.95 0.00 UnnamedSequence 5372 5686 3314 + RLTR10 LTR/ERVK 1 318 72
2393 5.71 0.95 0.00 UnnamedSequence 5372 5686 (3314) RLTR10#LTR/ERVK 1 318 (72) m_b1s501i4
UnnamedSequen 5372 TGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGAGACTGCAGCT 5421
i
RLTR10#LTR/ER 1 TGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGGGACTGCAGCT 50
UnnamedSequen 5422 AAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTG 5471
RLTR10#LTR/ER 51 AAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTG 100
UnnamedSequen 5472 AGAGCTGCGCAGGTGCACCAGGATACCGGTGAATCCAATTTGGTGGAGAT 5521
v i v
RLTR10#LTR/ER 101 AGTGCTGCGCAGGTGTACCAGGATACAGGTGAATCCAATTTGGTGGAGAT 150
UnnamedSequen 5522 TTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGACTGGCGAGGGGGCG 5571
v i v
RLTR10#LTR/ER 151 TTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTGAGGTGGCG 200
UnnamedSequen 5572 TGGCCTGCGGTGCGTGGATGAGA---GAGAGTATAAAAGGAGTGAGAGGC 5618
v i --- ?
RLTR10#LTR/ER 201 TGGCCTGCTGTGCGTGGATGGGAACTGAGAGTATAAAAGNAGTGAGAGGC 250
UnnamedSequen 5619 CCAGGGTTCGGGGGAGATATAAAAACAAGGGAGATAAAAACAAGGGAGAT 5668
v
RLTR10#LTR/ER 251 CCAGGGTTCGGGGGAGATATAAAAACAAGGGAGATATAAACAAGGGAGAT 300
UnnamedSequen 5669 ATAAAAACAAGGGAGATA 5686
i i v iii i i
RLTR10#LTR/ER 301 ATAGAGAAAGAAGAAACA 318
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 5.99
Transitions / transversions = 1.57 (11/7)
Gap_init rate = 0.00 (1 / 314), avg. gap size = 3.00 (3 / 1)
+ 966 9.6 3.2 0.6 UnnamedSequence 5715 5872 (3128) + RLTR10 LTR/ERVK 227 388 (2) 6
ANNOTATION EVIDENCE:
966 9.55 3.16 0.62 UnnamedSequence 5715 5872 3128 + RLTR10 LTR/ERVK 227 388 2
966 9.55 3.16 0.62 UnnamedSequence 5715 5872 (3128) RLTR10#LTR/ERVK 227 388 (2) m_b1s501i5
UnnamedSequen 5715 GAGA-TATAAAAACAAGGGAGATATATAAA---CAAGGGAGATATAAAAA 5760
- i? - v viivi ii--- ii
RLTR10#LTR/ER 227 GAGAGTATAAAAGNA-GTGAGAGGCCCAGGGTTCGGGGGAGATATAAAAA 275
UnnamedSequen 5761 CAAGGGAGATATAAACAAGGGAGATATAAA-CAAGAAGAAACAGGACTGA 5809
i -v
RLTR10#LTR/ER 276 CAAGGGAGATATAAACAAGGGAGATATAGAGAAAGAAGAAACAGGACTGA 325
UnnamedSequen 5810 ATAAATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCTGT 5859
i v
RLTR10#LTR/ER 326 ATAAACGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCAGT 375
UnnamedSequen 5860 TGAGCGCGCGCAA 5872
RLTR10#LTR/ER 376 TGAGCGCGCGCAA 388
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 9.03
Transitions / transversions = 2.00 (10/5)
Gap_init rate = 0.03 (4 / 157), avg. gap size = 1.50 (6 / 4)
+ 4118 4.0 0.1 0.2 UnnamedSequence 5876 6770 (2230) + RLTR10-int LTR/ERVK 2 998 (989) 6
ANNOTATION EVIDENCE:
283 20.76 5.06 2.47 UnnamedSequence 5876 5954 3046 + IAPEY5_I LTR/ERVK 2 82 3492
283 20.76 5.06 2.47 UnnamedSequence 5876 5954 (3046) IAPEY5_I#LTR/ERVK 2 82 (3492) m_b1s701i10
UnnamedSequen 5876 TTGGTGCTGAAACCCGGGAAAAGA---AACATCTTCAGTCACGAGCGAAG 5922
i i vv v--- v vi i ivv --i
IAPEY5_I#LTR/ 2 TTGGCGCCGAAACCCGGGAACTGCCTTACCATCGCCGGCGCCGAG--GAG 49
UnnamedSequen 5923 ACCCCCTGCT-ACAGGGAGGATTCAGAACTGCA 5954
i -i i
IAPEY5_I#LTR/ 50 ACCCCCCGCTCGCGGGGAGGATTCAGAACTGCA 82
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 13.80
Transitions / transversions = 1.29 (9/7)
Gap_init rate = 0.05 (4 / 78), avg. gap size = 1.50 (6 / 4)
3649 2.29 0.00 0.00 UnnamedSequence 5885 6320 2680 + RLTR10-int LTR/ERVK 41 476 1511
3649 2.29 0.00 0.00 UnnamedSequence 5885 6320 (2680) RLTR10-int#LTR/ERVK 41 476 (1511) m_b1s701i11
UnnamedSequen 5885 AAACCCGGGAAAAGAAACATCTTCAGTCACGAGCGAAGACCCCCTGCTAC 5934
v
RLTR10-int#LT 41 AAACCCGGGAAAAGAAACATCTTCAGGCACGAGCGAAGACCCCCTGCTAC 90
UnnamedSequen 5935 AGGGAGGATTCAGAACTGCATAACGGGGAAGAAGGGGTTAATAAAGTGTT 5984
v i v i
RLTR10-int#LT 91 AGGGAGGATTCAGAACTGCATCACGGGGAAGGAGCGGTTAATAAAGCGTT 140
UnnamedSequen 5985 CCCGTAAAACAGACTGTTGAGAAGGATCCGGCGTGGATTCAGAACTCTTC 6034
RLTR10-int#LT 141 CCCGTAAAACAGACTGTTGAGAAGGATCCGGCGTGGATTCAGAACTCTTC 190
UnnamedSequen 6035 AGCTGGGGAACGGTACTGATGAAGAGAAAGAAGAAAGATGAAGACTGAAT 6084
RLTR10-int#LT 191 AGCTGGGGAACGGTACTGATGAAGAGAAAGAAGAAAGATGAAGACTGAAT 240
UnnamedSequen 6085 AAACTGCTGTTAGAAGGACTGGTGGTCGCGTCGTTCTTGCTGGTCGAGAG 6134
RLTR10-int#LT 241 AAACTGCTGTTAGAAGGACTGGTGGTCGCGTCGTTCTTGCTGGTCGAGAG 290
UnnamedSequen 6135 CGGGCGCGACAATTGGTGGCCCGTACGGGGAACCGACTCCCCCACCGAGT 6184
RLTR10-int#LT 291 CGGGCGCGACAATTGGTGGCCCGTACGGGGAACCGACTCCCCCACCGAGT 340
UnnamedSequen 6185 TCAGAACTTTCAGCAGTCAGTGGTTGCCGGCAGGGTAAGTTCACGGTGAG 6234
RLTR10-int#LT 341 TCAGAACTTTCAGCAGTCAGTGGTTGCCGGCAGGGTAAGTTCACGGTGAG 390
UnnamedSequen 6235 TGAAACTTGCAACCCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGG 6284
i
RLTR10-int#LT 391 TGAAACTTGCGACCCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGG 440
UnnamedSequen 6285 CAAGCATAAAGTTGCCAGGAAGCAGGCACAAGGTAA 6320
ii i i
RLTR10-int#LT 441 TGAGCATAAAGTTGCCAGGAAGTAGGCACAAAGTAA 476
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 1.91
Transitions / transversions = 2.33 (7/3)
Gap_init rate = 0.00 (0 / 435), avg. gap size = 0.0 (0 / 0)
4118 5.37 0.19 0.38 UnnamedSequence 6248 6770 2230 + RLTR10-int LTR/ERVK 477 998 989
4118 5.37 0.19 0.38 UnnamedSequence 6248 6770 (2230) RLTR10-int#LTR/ERVK 477 998 (989) m_b1s701i12
UnnamedSequen 6248 CCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGGCAAGCATAAAGTT 6297
i
RLTR10-int#LT 477 CCCAGGAGTTTGGGAAGGACCTCGGATAAAATAGAGGCGAGCATAAAGTT 526
UnnamedSequen 6298 GCCAGGAAGCAGGCACAAGGTAATAAAAGGTTCCTGGTTTTGGGATAAGT 6347
ii i i i
RLTR10-int#LT 527 GCCAGGAAGCAGGCACAAGGTAACGAAAGGTTCCCGGCTTTGGGACAAGT 576
UnnamedSequen 6348 TAAGGTTCACGGTTTCAGGATAGATTAAGGAACTATGATAACCTCAGTGT 6397
v vi i ii
RLTR10-int#LT 577 TAAGGTTCCCGGTTTGGGGACAAGTTAAGGAACTATGATAACCTCAGTGT 626
UnnamedSequen 6398 AGTGATCAATAGATCCTCGCTGTGTAGTTATGCTTTTTTCTCCCATTGAC 6447
RLTR10-int#LT 627 AGTGATCAATAGATCCTCGCTGTGTAGTTATGCTTTTTTCTCCCATTGAC 676
UnnamedSequen 6448 CCTTTGTGGGTAGGTCTGATAGTTTTGGTCTTGTTTGTTCTGATATATGG 6497
RLTR10-int#LT 677 CCTTTGTGGGTAGGTCTGATAGTTTTGGTCTTGTTTGTTCTGATATATGG 726
UnnamedSequen 6498 ACTCTGTTACTGTTTGAAACTGTGTGTAGAGGCAGTCAAGACAGGTCAGA 6547
RLTR10-int#LT 727 ACTCTGTTACTGTTTGAAACTGTGTGTAGAGGCAGTCAAGACAGGTCAGA 776
UnnamedSequen 6548 AAATCCTTATAGAGCAACAAGAAAATATGTCGGAAGAGGAGAAGGGCTTA 6597
i i
RLTR10-int#LT 777 AAATCCTTACAGAGCAACAAGAAAGTATGTCGGAAGAGGAGAAGGGCTTA 826
UnnamedSequen 6598 AAAAGAAAAAGGAAAAAGAAAGGAGACACAGTGTTATCAGGTGGACAGAA 6647
RLTR10-int#LT 827 AAAAGAAAAAGGAAAAAGAAAGGAGACACAGTGTTATCAGGTGGACAGAA 876
UnnamedSequen 6648 AGGACAGGACAACAGAGTCGAGGCGGAGGAGG-AGGTGAATTAGCTTCTG 6696
ii i v i - i
RLTR10-int#LT 877 AGGACAAAATAAAAGAGCCGAGGCGGAGGAGGAAGGCGAATTAGCTTCTG 926
UnnamedSequen 6697 CTCCCCCTCCCTATGCCTCCTCAGCAGCCATCTATGGGCAGACCTTCTGT 6746
v i i i i i
RLTR10-int#LT 927 CGCCCCCTCCCTATGCCTCCTCGGCAGCCACCTGTAGGCGGACCTTCTGT 976
UnnamedSequen 6747 CCGGAGGTCTGGAAAGAGGATAGA 6770
i -- v
RLTR10-int#LT 977 CCGGAGGTTTGG--AGAGGATCGA 998
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 4.48
Transitions / transversions = 4.60 (23/5)
Gap_init rate = 0.01 (3 / 522), avg. gap size = 1.00 (3 / 3)
+ 811 12.2 0.7 0.7 UnnamedSequence 6816 6964 (2036) + RLTR10-int LTR/ERVK 983 1131 (5025) 6
ANNOTATION EVIDENCE:
811 12.16 0.67 0.67 UnnamedSequence 6816 6964 2036 + MMERVK10D3_I LTR/ERVK 983 1131 5025
811 12.16 0.67 0.67 UnnamedSequence 6816 6964 (2036) MMERVK10D3_I#LTR/ERVK 983 1131 (5025) m_b1s701i13
UnnamedSequen 6816 GCATGGGATAGAGATATGCTGCTTGATCAAGGTAGATTTG-CACAACAAC 6864
? i ? i ?v ? - i i -
MMERVK10D3_I# 983 GCNTGGGATAGGGATATGCTGCTNGGTCAAGGNCGNTTTGCCGCAGC-AC 1031
UnnamedSequen 6865 AGACAGGATATCCAGTGCAGGTGTTTGAGCAGGTGAATCAGATTGCCATA 6914
i ? ? ? v i ? ? ? i?
MMERVK10D3_I# 1032 AGACAAGNTATCCNGTGCAGGTNTATGAGCAGATNAATNAGATNGCCACN 1081
UnnamedSequen 6915 AGGGCGTGGAAATCATTGCCCAACAGAGGGGAAGCTAGTGAAAACTTGAC 6964
? i? ii ? i iii ? iv
MMERVK10D3_I# 1082 AGGGCNTGGAAGNCGCTGCCNAACAGAGGAGAAGTCGGNGGCAACTTGAC 1131
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 12.69
Transitions / transversions = 5.00 (15/3)
Gap_init rate = 0.01 (2 / 148), avg. gap size = 1.00 (2 / 2)
+ 8567 2.1 0.0 0.1 UnnamedSequence 7046 8044 (956) + RLTR10-int LTR/ERVK 990 1987 (0) 7
ANNOTATION EVIDENCE:
8567 2.10 0.00 0.10 UnnamedSequence 7046 8044 956 + RLTR10-int LTR/ERVK 990 1987 0
8567 2.10 0.00 0.10 UnnamedSequence 7046 8044 (956) RLTR10-int#LTR/ERVK 990 1987 (0) m_b1s701i14
UnnamedSequen 7046 GGGGATCGACCAGATCAGGTGTTGACGTGGGCGAGAGGGTCTGTTTGTGT 7095
i
RLTR10-int#LT 990 GAGGATCGACCAGATCAGGTGTTGACGTGGGCGAGAGGGTCTGTTTGTGT 1039
UnnamedSequen 7096 GTTTCCACAGGACCAGACTGAACCTCTTTGGGTGCCGGAGAGATTGGTGA 7145
v
RLTR10-int#LT 1040 GTTTCCACAGGACCAGACGGAACCTCTTTGGGTGCCGGAGAGATTGGTGA 1089
UnnamedSequen 7146 GACGCTGCAAGAATGAGGCTCCTGATCCAGTTGCCCCTGTGGATGTGGTG 7195
RLTR10-int#LT 1090 GACGCTGCAAGAATGAGGCTCCTGATCCAGTTGCCCCTGTGGATGTGGTG 1139
UnnamedSequen 7196 GATGATCCCACAAGCACAAAGGATGGAGCCGAGATGAGAGATCCTTTTGG 7245
i i
RLTR10-int#LT 1140 GATGATCCCACAAGCACAAAGGATGGAGCCGAGATGGGAGATCCTTTCGG 1189
UnnamedSequen 7246 TATTCCAGAAGCCGATACCAGCTCGACATGACATTCAAATTTTTCCATGC 7295
i
RLTR10-int#LT 1190 TATTCCAGAAGCCGATACCAGCTCGACATGACATTCAAATTTTTCCACGC 1239
UnnamedSequen 7296 TTTTTGATCCCTGAATTTCCCTTAAAGAAATAGCCCCTCTGGCTATCTAT 7345
i i i
RLTR10-int#LT 1240 TTTTTGATCCCTGAATTCCCCTTAAAGAGATAGCCCCTCTGGCCATCTAT 1289
UnnamedSequen 7346 CCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGATGTATGCT 7395
RLTR10-int#LT 1290 CCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGATGTATGCT 1339
UnnamedSequen 7396 TGTTATAGTGCGTGTGCGTTGTGTGTTTGGCACATGTGTTAGGTGCAGAG 7445
i i v
RLTR10-int#LT 1340 TGTTATAGTGTGTGTGTGTTTTGTGTTTGGCACATGTGTTAGGTGCAGAG 1389
UnnamedSequen 7446 TGTGCAGGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTGCAGTGG 7495
-
RLTR10-int#LT 1390 TGTGC-GGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTGCAGTGG 1438
UnnamedSequen 7496 AGGCGGGACAATCTCCTCAGATTCGGTTTGCTGCTCTAAAAGAAATTATG 7545
i
RLTR10-int#LT 1439 AGGCGGGACAATCTCCTCAGATTCGGTTTGCCGCTCTAAAAGAAATTATG 1488
UnnamedSequen 7546 CTGCGTTATGCCGTGGGTTGCGAGGCTAAGCACTGCACAGAGGATAGCTT 7595
v
RLTR10-int#LT 1489 CTGCGTTATGCCGTGGGGTGCGAGGCTAAGCACTGCACAGAGGATAGCTT 1538
UnnamedSequen 7596 GCTGTTGGCATCCTGTGGAAGGCACGTCTGATTGCATGAAGGTTCAGTGT 7645
RLTR10-int#LT 1539 GCTGTTGGCATCCTGTGGAAGGCACGTCTGATTGCATGAAGGTTCAGTGT 1588
UnnamedSequen 7646 CCTAGTTCCCTTCCCCCAGGAAAAACGACACAGGAGCTGGCCAAGACCTC 7695
i
RLTR10-int#LT 1589 CCTAGTTCCCTTCCCCCAGGAAAAACGACACGGGAGCTGGCCAAGACCTC 1638
UnnamedSequen 7696 TCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTATGCTTGC 7745
RLTR10-int#LT 1639 TCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTATGCTTGC 1688
UnnamedSequen 7746 ACACTGGGGATCAGACCTCTACCTTCACCCATGAGGCTTGCTTGCAGCAA 7795
RLTR10-int#LT 1689 ACACTGGGGATCAGACCTCTACCTTCACCCATGAGGCTTGCTTGCAGCAA 1738
UnnamedSequen 7796 TTAAGATCTGGCCATAGATTAATCAACATCCTGGCCTTTTGATGCACCTG 7845
i i
RLTR10-int#LT 1739 TTAAGATCTGGCCATAGGTTAATTAACATCCTGGCCTTTTGATGCACCTG 1788
UnnamedSequen 7846 CCGCAAGCAAAACACAATCTCCCCAGGAGTGGCTTGGCATAATAGAGAGG 7895
? i
RLTR10-int#LT 1789 CCGCAAGCAAAACACAATCTCCCCAGGNGTGGCTTGGCATGATAGAGAGG 1838
UnnamedSequen 7896 TAGTCAGTGATAAGACTCCCTGGGCATGTCACCAACCTAAGACAGGGATC 7945
RLTR10-int#LT 1839 TAGTCAGTGATAAGACTCCCTGGGCATGTCACCAACCTAAGACAGGGATC 1888
UnnamedSequen 7946 AAACCAATGCTGTTTGTCACCCAAGGACGGGTAAGGGGCATGGCTGCGAG 7995
i
RLTR10-int#LT 1889 AAACCAATGCTGTTTGTCACCCAAGGACGGGTAAGGGGCATGGCTGCGGG 1938
UnnamedSequen 7996 GGGCTATCTACAGACATTCTCTCTGCCAAAAAAGAAAAAAAGGGGGAAT 8044
i ii
RLTR10-int#LT 1939 GGGCTATCTACAGACATTCTCTCTGCCAAAAAAGAAAAAAGGGGGAGAT 1987
Matrix = 20p47g.matrix
Kimura (with divCpGMod) = 1.77
Transitions / transversions = 6.00 (18/3)
Gap_init rate = 0.00 (1 / 998), avg. gap size = 1.00 (1 / 1)
+ 2393 5.7 0.9 0.0 UnnamedSequence 8045 8359 (641) + RLTR10 LTR/ERVK 1 318 (72) 7
ANNOTATION EVIDENCE:
2393 5.71 0.95 0.00 UnnamedSequence 8045 8359 641 + RLTR10 LTR/ERVK 1 318 72
2393 5.71 0.95 0.00 UnnamedSequence 8045 8359 (641) RLTR10#LTR/ERVK 1 318 (72) m_b1s501i6
UnnamedSequen 8045 TGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGAGACTGCAGCT 8094
i
RLTR10#LTR/ER 1 TGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGGGACTGCAGCT 50
UnnamedSequen 8095 AAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTG 8144
RLTR10#LTR/ER 51 AAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTG 100
UnnamedSequen 8145 AGAGCTGCGCAGGTGCACCAGGATACCGGTGAATCCAATTTGGTGGAGAT 8194
v i v
RLTR10#LTR/ER 101 AGTGCTGCGCAGGTGTACCAGGATACAGGTGAATCCAATTTGGTGGAGAT 150
UnnamedSequen 8195 TTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGACTGGCGAGGGGGCG 8244
v i v
RLTR10#LTR/ER 151 TTGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTGAGGTGGCG 200
UnnamedSequen 8245 TGGCCTGCGGTGCGTGGATGAGA---GAGAGTATAAAAGGAGTGAGAGGC 8291
v i --- ?
RLTR10#LTR/ER 201 TGGCCTGCTGTGCGTGGATGGGAACTGAGAGTATAAAAGNAGTGAGAGGC 250
UnnamedSequen 8292 CCAGGGTTCGGGGGAGATATAAAAACAAGGGAGATAAAAACAAGGGAGAT 8341
v
RLTR10#LTR/ER 251 CCAGGGTTCGGGGGAGATATAAAAACAAGGGAGATATAAACAAGGGAGAT 300
UnnamedSequen 8342 ATAAAAACAAGGGAGATA 8359
i i v iii i i
RLTR10#LTR/ER 301 ATAGAGAAAGAAGAAACA 318
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 5.99
Transitions / transversions = 1.57 (11/7)
Gap_init rate = 0.00 (1 / 314), avg. gap size = 3.00 (3 / 1)
+ 926 10.8 3.2 0.6 UnnamedSequence 8388 8545 (455) + RLTR10 LTR/ERVK 227 388 (2) 8
ANNOTATION EVIDENCE:
926 10.83 3.16 0.62 UnnamedSequence 8388 8545 455 + RLTR10 LTR/ERVK 227 388 2
926 10.83 3.16 0.62 UnnamedSequence 8388 8545 (455) RLTR10#LTR/ERVK 227 388 (2) m_b1s501i7
UnnamedSequen 8388 GAGA-TATAAAAACAAGGGAGATATATAAA---CAAGGGAGATATAAAAA 8433
- i? - v viivi ii--- ii
RLTR10#LTR/ER 227 GAGAGTATAAAAGNA-GTGAGAGGCCCAGGGTTCGGGGGAGATATAAAAA 275
UnnamedSequen 8434 CAAGGGAGATATAAACAAGGGAGATATAAA-CAAGAAGAAACAGGACTGA 8482
i -v
RLTR10#LTR/ER 276 CAAGGGAGATATAAACAAGGGAGATATAGAGAAAGAAGAAACAGGACTGA 325
UnnamedSequen 8483 ATAAATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCTGT 8532
i v
RLTR10#LTR/ER 326 ATAAACGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCAGT 375
UnnamedSequen 8533 TGAGCGCGGGTAA 8545
v i
RLTR10#LTR/ER 376 TGAGCGCGCGCAA 388
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 10.51
Transitions / transversions = 1.83 (11/6)
Gap_init rate = 0.03 (4 / 157), avg. gap size = 1.50 (6 / 4)
+ 271 19.4 1.5 1.4 UnnamedSequence 8624 8694 (306) + RLTR20C1_MM LTR/ERVK 404 478 (92) 9
ANNOTATION EVIDENCE:
266 21.74 8.70 0.00 UnnamedSequence 8624 8692 308 + RLTR20C1_MM LTR/ERVK 404 478 92
266 21.74 8.70 0.00 UnnamedSequence 8624 8692 (308) RLTR20C1_MM#LTR/ERVK 404 478 (92) m_b1s501i8
UnnamedSequen 8624 TAGTCA----ACTTTGAAA--TCATATATATATATATGTATGTGTGTGTG 8667
---- v ii -- v ii i i i i i i
RLTR20C1_MM#L 404 TAGTCACGGCACGTCAAAAATTAACGTGTGTGTGTGTGTGTGTGTGTGTG 453
UnnamedSequen 8668 TGTGTGTATGCATGTGTGTGTGTGT 8692
i ii
RLTR20C1_MM#L 454 TGTGTGTGTGTGTGTGTGTGTGTGT 478
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 25.14
Transitions / transversions = 6.50 (13/2)
Gap_init rate = 0.03 (2 / 68), avg. gap size = 3.00 (6 / 2)
271 18.97 0.00 1.72 UnnamedSequence 8636 8694 306 + RLTR20C1_MM LTR/ERVK 421 478 92
271 18.97 0.00 1.72 UnnamedSequence 8636 8694 (306) RLTR20C1_MM#LTR/ERVK 421 478 (92) m_b1s501i9
UnnamedSequen 8636 AAATCATATATATATATATGTATGTGTGTGTGTGTGTGTATGCATGTGTG 8685
i - ii i i i i i i ii
RLTR20C1_MM#L 421 AAATTA-ACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 469
UnnamedSequen 8686 TGTGTGTGT 8694
RLTR20C1_MM#L 470 TGTGTGTGT 478
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 21.14
Transitions / transversions = 1.00 (11/0)
Gap_init rate = 0.02 (1 / 58), avg. gap size = 1.00 (1 / 1)
+ 375 28.6 2.2 1.1 UnnamedSequence 8905 8996 (4) C PB1D9 SINE/Alu (27) 93 1 10
ANNOTATION EVIDENCE:
375 28.57 2.17 1.08 UnnamedSequence 8905 8996 4 C PB1D9 SINE/Alu 1 93 27
375 28.57 2.17 1.08 UnnamedSequence 8905 8996 (4) C PB1D9#SINE/Alu (27) 93 1 m_b1s501i10
UnnamedSequen 8905 TATGCAGCCCTAGATAGTTTAGAACTCACAGAGAT--GTATAGTTTCTGT 8952
i i i v i ii v -- iv - ii i
C PB1D9#SINE/Al 93 TGTGTAGCCCTGGCTGGCCTCGAACTCACAGAGATCCGCCT-GCCTCTGC 45
UnnamedSequen 8953 CTCTGGAATGATGGGATTAAAGATATAAGCAACCATGCCTGCCT 8996
iv i v iii iv v i i v
C PB1D9#SINE/Al 44 CTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCT 1
Matrix = 25p47g.matrix
Kimura (with divCpGMod) = 32.24
Transitions / transversions = 2.25 (18/8)
Gap_init rate = 0.02 (2 / 91), avg. gap size = 1.50 (3 / 2)