position in query- -position in repeat-
% % % query C matching repeat (left) end begin linkage
+ score div. del. ins. sequence begin end (left) + repeat class/family begin end (left) id/graphic
+ 67 3.1 0.0 0.0 UnnamedSequence 1239 1304 (7696) + (GT)n Simple_repeat 1 66 (0) 1
ANNOTATION EVIDENCE: 67 3.13 0.00 0.00 UnnamedSequence 1239 1304 7696 + (GT)n Simple_repeat 1 66 0 67 3.13 0.00 0.00 UnnamedSequence 1239 1304 (7696) (GT)n#Simple_repeat 1 66 (0) c_b1s251i0 UnnamedSequen 1239 GTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 1288 i (GT)n#Simple_ 1 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 50 UnnamedSequen 1289 GTGTATGTGTGTGTGT 1304 i (GT)n#Simple_ 51 GTGTGTGTGTGTGTGT 66 Matrix = Unknown Transitions / transversions = 1.00 (2/0) Gap_init rate = 0.00 (0 / 65), avg. gap size = 0.0 (0 / 0)
+ 2730 8.0 0.3 2.7 UnnamedSequence 1322 1695 (7305) C RLTR8 LTR/ERVK (0) 365 1 2
ANNOTATION EVIDENCE: 2730 7.97 0.27 2.74 UnnamedSequence 1322 1695 6681 C RLTR8 LTR/ERVK 1 365 0 2730 7.97 0.27 2.74 UnnamedSequence 1322 1695 (6681) C RLTR8#LTR/ERVK (0) 365 1 c_b1s401i0 UnnamedSequen 1322 TGACCCAGTCCATGAGTCATTCAACAGGGTCTGCAAGAGAGAAAGTGGGG 1371 i ii i v i i C RLTR8#LTR/ERV 365 TGACCCGGTCCGCGGGTCAGTCAACGGGGTCTGCAAGAGAGAGAGTGGGG 316 UnnamedSequen 1372 ACTGAGGGGCAAGAGACTTGAAGAATGGAGACAAGACAGGCTATCTGATC 1421 ? vi ? i C RLTR8#LTR/ERV 315 ACNGAGGGGCAAGAGACGCGAAGAATGGAGACAAGACAGNCTGTCTGATC 266 UnnamedSequen 1422 AAGGATCAAGTCTTAAGTCAAGTTGGAAGGCAACTATGGGTATATAAGTA 1471 vv ---i ------- i ? i C RLTR8#LTR/ERV 265 AAGTCTCA---TTTA-------TTGAAAGGCAACTATGGGTATATANGCA 226 UnnamedSequen 1472 CAAGCTGGGGAATGCAGCTGGAGACACTTAACCATAGGTCCAGGATATAT 1521 ? i i i i i C RLTR8#LTR/ERV 225 CANGCTGGGGAGTGCAGCTGGAGACACTTAACCACAAGTCCAGGATGTGT 176 UnnamedSequen 1522 AGGAGAAAACCAAGATGTTATCAGAGTGTGTTCAGCTGTGGTGGGCTTCT 1571 v C RLTR8#LTR/ERV 175 AGGAGAAAAACAAGATGTTATCAGAGTGTGTTCAGCTGTGGTGGGCTTCT 126 UnnamedSequen 1572 TGCAAAAACATCATGCTAGGAAAACAAGTTTCTTGTCAGGGTGAAAAAGT 1621 i i i C RLTR8#LTR/ERV 125 TGCAAAAACATCATGCTAGGAAAACAAGTCTCTCGTCAGGGTGGAAAAGT 76 UnnamedSequen 1622 ACC-ACCTGTAAGTAACTAGCCCGAGATAGCTGCAGATATGATAGCCACT 1670 - v i v i C RLTR8#LTR/ERV 75 ACCGACCTGTAAGTAAATAGCCCGAGATGGCTGCAGAGATGATAGCCGCT 26 UnnamedSequen 1671 TTCTGCTAAGAGTCCGCTCCCAACA 1695 v C RLTR8#LTR/ERV 25 TTCTGCTAAGAGTCGGCTCCCAACA 1 Matrix = 18p51g.matrix Kimura (with divCpGMod) = 6.62 Transitions / transversions = 2.62 (21/8) Gap_init rate = 0.03 (11 / 373), avg. gap size = 1.00 (11 / 11)
+ 981 12.2 0.7 2.7 UnnamedSequence 1772 1922 (7078) C B1_Mur4 SINE/Alu (1) 149 2 3
ANNOTATION EVIDENCE: 981 12.25 0.66 2.70 UnnamedSequence 1772 1922 7049 C B1_Mur4 SINE/Alu 2 149 1 981 12.25 0.66 2.70 UnnamedSequence 1772 1922 (7049) C B1_Mur4#SINE/Alu (1) 149 2 c_b1s355i0 UnnamedSequen 1772 TTTGTTTGTTTGAGACAGGATCTCTCTGTGTAACCCTGGCTGTCCTGGAA 1821 v i i i C B1_Mur4#SINE/ 149 TTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA 100 UnnamedSequen 1822 TTCCCTCTGTAGACCATGCTGGCCTTAAACTCACAGAGATCCACCTGCCT 1871 i v v ii i C B1_Mur4#SINE/ 99 CTCGCTCTGTAGACCAGGCTGGCCTCGAACTCACAGAGATCCGCCTGCCT 50 UnnamedSequen 1872 CTGCCTCTCGAGTGCTGAGTGGGATTAGAGATCTGC-CCTCCACCACCTG 1920 i ---- i iiv - v i i C B1_Mur4#SINE/ 49 CTGCCTCCCGAGTGC----TGGGATTAAAGGCGTGCGCCACCACCGCCCG 4 UnnamedSequen 1921 GC 1922 C B1_Mur4#SINE/ 3 GC 2 Matrix = 18p51g.matrix Kimura (with divCpGMod) = 9.79 Transitions / transversions = 2.60 (13/5) Gap_init rate = 0.03 (5 / 150), avg. gap size = 1.00 (5 / 5)
+ 656 24.0 6.4 1.2 UnnamedSequence 1968 2123 (6877) C RSINE1 SINE/B4 (0) 165 2 4
ANNOTATION EVIDENCE: 656 24.01 6.41 1.22 UnnamedSequence 1968 2123 6848 C RSINE1 SINE/B4 2 165 0 656 24.01 6.41 1.22 UnnamedSequence 1968 2123 (6848) C RSINE1#SINE/B4 (0) 165 2 c_b1s355i1 UnnamedSequen 1968 TGTGCACGTGTGTGGGCTTGTGCTTTCCATGGCACCCGTGTGGACGTCAG 2017 iii v -- i v v i i v v C RSINE1#SINE/B 165 TGTGTGTGTGTGTGTGC--GCGCGTGCCACGGCGCGCGTGTGGAGGTCAG 118 UnnamedSequen 2018 AGGACAACTTGCAAGAGTCAGTTCTCT--GTCTACCACGTGGGTCACAGG 2065 ii i --v i i v i C RSINE1#SINE/B 117 AGGACAACTTGCGGGAGTCGGTTCTCTCCTTCCACCATGTGGGTCCCGGG 68 UnnamedSequen 2066 GATTGGTCTTGGGTTATCAGGCTC--------TTACCTTTACTTGCTGAG 2107 i iv ii ii i--------vii ii C RSINE1#SINE/B 67 GATCGAACTCAGGTCGTCAGGCTTGGCGGCAAGCGCCTTTACCCGCTGAG 18 UnnamedSequen 2108 CTATCTCATGGACCCC 2123 i iiv i C RSINE1#SINE/B 17 CCATCTCGCCGGCCCC 2 Matrix = 18p51g.matrix Kimura (with divCpGMod) = 20.21 Transitions / transversions = 2.70 (27/10) Gap_init rate = 0.03 (4 / 155), avg. gap size = 3.00 (12 / 4)
+ 541 20.9 4.3 0.8 UnnamedSequence 2124 2239 (6761) C B4 SINE/B4 (66) 226 107 5
ANNOTATION EVIDENCE: 541 20.86 4.31 0.83 UnnamedSequence 2124 2239 6442 C B4 SINE/B4 107 226 66 541 20.86 4.31 0.83 UnnamedSequence 2124 2239 (6442) C B4#SINE/B4 (66) 226 107 m_b1s501i0 UnnamedSequen 2124 ACCTTGGTTTTTGAGACAAGGTCTCTCATTGGCCTGCAGCCCACCAAGTA 2173 v i i v i i i C B4#SINE/B4 226 ACCTTGTTTTTTGAGACAGGGTCTCTCACTGGCCTGGAGCTCGCCGAGTA 177 UnnamedSequen 2174 GGCTGGTCTGGCTAAGGAGCCAAGTCCCAGAGATCTGCCTCTTGCCATCT 2223 i v iivv - i i i i v iv iii C B4#SINE/B4 176 GGCTAGGCTGGCTGGCCAG-CGAGCCCCAGGGATCCGCCTGTCTCTGCCT 128 UnnamedSequen 2224 TCCCA--GCTG---TTACAAG 2239 i -- --- C B4#SINE/B4 127 CCCCAGCGCTGGGATTACAAG 107 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 20.65 Transitions / transversions = 2.43 (17/7) Gap_init rate = 0.03 (3 / 115), avg. gap size = 2.00 (6 / 3)
+ 13 12.5 0.0 0.0 UnnamedSequence 2459 2484 (6516) + (AGGGC)n Simple_repeat 1 26 (0) 6
ANNOTATION EVIDENCE: 13 12.53 0.00 0.00 UnnamedSequence 2459 2484 6197 + (AGGGC)n Simple_repeat 1 26 0 13 12.53 0.00 0.00 UnnamedSequence 2459 2484 (6197) (AGGGC)n#Simple_repeat 1 26 (0) m_b1s252i0 UnnamedSequen 2459 AGAGCAGGGCAGGGCAGGGCTGGTCA 2484 i v v (AGGGC)n#Simp 1 AGGGCAGGGCAGGGCAGGGCAGGGCA 26 Matrix = Unknown Transitions / transversions = 0.50 (1/2) Gap_init rate = 0.00 (0 / 25), avg. gap size = 0.0 (0 / 0)
+ 185 24.4 0.0 0.0 UnnamedSequence 2954 2994 (6006) + MIRb SINE/MIR 110 150 (118) 7
ANNOTATION EVIDENCE: 185 24.39 0.00 0.00 UnnamedSequence 2954 2994 5687 + MIRb SINE/MIR 110 150 118 185 24.39 0.00 0.00 UnnamedSequence 2954 2994 (5687) MIRb#SINE/MIR 110 150 (118) m_b1s601i0 UnnamedSequen 2954 CTTGGCCCTTCTGAGCCTCTGTTCTCTCTTTTGTAAAATAG 2994 ii ii v ii v i i MIRb#SINE/MIR 110 CTTAACCTCTCTGAGCCTCAGTTTCCTCATCTGTAAAATGG 150 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 31.47 Transitions / transversions = 4.00 (8/2) Gap_init rate = 0.00 (0 / 40), avg. gap size = 0.0 (0 / 0)
+ 393 31.1 4.1 4.8 UnnamedSequence 3064 3232 (5768) + MIRb SINE/MIR 85 252 (16) 8
ANNOTATION EVIDENCE: 393 31.07 4.14 4.76 UnnamedSequence 3064 3232 5449 + MIRb SINE/MIR 85 252 16 393 31.07 4.14 4.76 UnnamedSequence 3064 3232 (5449) MIRb#SINE/MIR 85 252 (16) m_b1s601i1 UnnamedSequen 3064 TGGCTGGG-GCTCTTGAGCAGGAAGCTTACTCTAATCCCTGTCAGC-TCC 3111 i v - vi i i ---- - i i v v - v MIRb#SINE/MIR 85 TAGCTGTGTGACCTTGGGCAAG----TTACT-TAACCTCTCTGAGCCTCA 129 UnnamedSequen 3112 GACTCTTCATCTGTAAAGCATGAATCAAAGCACTGGCCTCTTGGGCTTGC 3161 vi i iiiv i v v ii ivi vii v i MIRb#SINE/MIR 130 GTTTCCTCATCTGTAAAATGGGGATAATAATACCTACCTCGCAGGGTTGT 179 UnnamedSequen 3162 TGTGAG-----CATGAGATAATACAGGTAAACCTCCTGGCACAGGGCCCG 3206 -----v i v v v i i v i MIRb#SINE/MIR 180 TGTGAGGATTAAATGAGATAATGCATGTAAAGCGCTTAGCACAGTGCCTG 229 UnnamedSequen 3207 GGGCTTGATAACGTGTACCCAACAGA 3232 vi v ii --- ii i i i MIRb#SINE/MIR 230 GCACATAGTAA---GCGCTCAATAAA 252 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 40.46 Transitions / transversions = 1.63 (31/19) Gap_init rate = 0.07 (11 / 168), avg. gap size = 1.36 (15 / 11)
+ 1446 18.3 13.6 1.1 UnnamedSequence 3265 3596 (5404) + MTD LTR/ERVL-MaLR 29 401 (18) 9
ANNOTATION EVIDENCE: 1446 18.27 13.55 1.07 UnnamedSequence 3265 3596 5085 + MTD LTR/ERVL-MaLR 29 401 18 1446 18.27 13.55 1.07 UnnamedSequence 3265 3596 (5085) MTD#LTR/ERVL-MaLR 29 401 (18) m_b1s501i1 UnnamedSequen 3265 CACAAGCTAGAGTCATCTGGGAAGAGAGAATCTCAATGAAGGAAATATCT 3314 i i vi i ii MTD#LTR/ERVL- 29 CACAAGCTAGAGTCATCTGGGAAGAGGGAACCTCAATTGAGAAAATGCCT 78 UnnamedSequen 3315 CTCTTAGATTGGCTTGTTGGGTAGT-TATAGGGTGTCTTCTTGATTAATG 3363 iv i i v vv - i i ii i i MTD#LTR/ERVL- 79 CCATCAGATTGGCCTGTGGGCAAGTCTGTGGGGCATTTTCTTGATTGATG 128 UnnamedSequen 3364 GTTGATTGTTGTGGGACGGCCCAGTCTATTGTGGGAGGTGCCACCCCTGG 3413 i ---- v i i i v MTD#LTR/ERVL- 129 ATTGAT----GTGGGAGGGCCCAGCCCACTGTGGGCGGTGCCACCCCTGG 174 UnnamedSequen 3414 GCAGGTGGTTCTGGGTTATAGATGAAAGCAGGCTGAGCAAGTCAT-GAGA 3462 i ?i v v i - i MTD#LTR/ERVL- 175 GCAGGTGGTCCTGGGTNGTATAAGAAAGCAGGCTGAGCAAGCCATGGGGA 224 UnnamedSequen 3463 TTAAGTCAGTAATGGGCG-TCCTCTATGATCTCTGCTGCAGT-------- 3503 vi i vvi - i ii v -------- MTD#LTR/ERVL- 225 GCAAGCCAGTAAGCAGCGTTCCTCCATGGCCTCTGCTTCAGTTCCTGCCT 274 UnnamedSequen 3504 -----------CCTTGA----CTG----GGCTCTTCTGAATGATGAACTA 3534 ----------- ---- ---- i iii vii i i MTD#LTR/ERVL- 275 CCAGGTTCCTGCCTTGAGTTCCTGCCCTGACTTCCCTCGGTGATGGACTG 324 UnnamedSequen 3535 T-AC---AAGCTGGAAGCTTAAATAAACTCTTTCCTCCCCAAGTAGCTTG 3580 - ---i i v v i v v MTD#LTR/ERVL- 325 TGACCTGGAACTGTAAGCTGAAATAAACCCTTTCCTCCCCAAGTTGCTTT 374 UnnamedSequen 3581 TAG-----------TATCACAGCAGTA 3596 i ----------- i MTD#LTR/ERVL- 375 TGGTCATGGTGTTTTATCACAGCAATA 401 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 21.21 Transitions / transversions = 2.33 (42/18) Gap_init rate = 0.04 (14 / 331), avg. gap size = 3.50 (49 / 14)
+ 619 19.8 0.9 0.0 UnnamedSequence 4079 4184 (4816) C URR1A DNA/hAT-Charlie (119) 107 1 10
ANNOTATION EVIDENCE: 619 19.81 0.94 0.00 UnnamedSequence 4079 4184 4497 C URR1A DNA/hAT-Charlie 1 107 119 619 19.81 0.94 0.00 UnnamedSequence 4079 4184 (4497) C URR1A#DNA/hAT-Charlie (119) 107 1 m_b1s501i2 UnnamedSequen 4079 TGACTTATGATGTAAATATCTGATATGCAGGATGCCTGA-ATGTGACCCC 4127 v ii i ii - i C URR1A#DNA/hAT 107 TGAATCGTAATGTAAATATCTGATATGCAGGATATCTGATATGCGACCCC 58 UnnamedSequen 4128 CATAAAAAGGCTGTTTGACCCTCAAAGAGGTTGCAACCCACGGGTTGGGA 4177 ii i i ii i i i i i i i C URR1A#DNA/hAT 57 TGTGAAAGGGTCGTTCGACCCCCAAAGGGGTCGCGACCCACAGGTTGAGA 8 UnnamedSequen 4178 ACCACTG 4184 i C URR1A#DNA/hAT 7 ACCGCTG 1 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 15.94 Transitions / transversions = 20.00 (20/1) Gap_init rate = 0.01 (1 / 105), avg. gap size = 1.00 (1 / 1)
+ 385 27.5 2.0 8.4 UnnamedSequence 4185 4229 (4771) + CYRA11_Mm Satellite/Y-chromosome 291 432 (185) 11
ANNOTATION EVIDENCE: 385 27.49 1.99 8.45 UnnamedSequence 4079 4229 4452 + CYRA11_Mm Satellite/Y-chromosome 291 432 185 385 27.49 1.99 8.45 UnnamedSequence 4079 4229 (4452) CYRA11_Mm#Satellite/Y-chromosome 291 432 (185) m_b1s501i3 UnnamedSequen 4079 TGACTTATGATGTAAATATCTGATATGCAGGATGCCTGAATGTGACCCCC 4128 v ii i ivv i v i- i CYRA11_Mm#Sat 291 TGAATCGTAATGTAAATATCTGATATGCAGATAGTCTTAG-GCGACCCCC 339 UnnamedSequen 4129 ATAAAAAGGCTGTTTGACCCTCA-AAGAGGTTGCAACCCACGGGTTGGGA 4177 i i ------? ---- - i v i i i i CYRA11_Mm#Sat 340 GTGAAA------NTTG----TCACAAGGGCTCGCGACCCACAGGTTGAGA 379 UnnamedSequen 4178 ACCACTGAACTAGAACCTAAGAGGTTCTG--AACTTCTAGATTTGTTGAG 4225 v vi i v v i? i viiv -- i ii v - ivi CYRA11_Mm#Sat 380 ACCACAGTGCCAGCAACTAGNAAGACTAGCCAGCCCCTTGATTT-TTACA 428 UnnamedSequen 4226 CTTT 4229 CYRA11_Mm#Sat 429 CTTT 432 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 30.20 Transitions / transversions = 1.92 (25/13) Gap_init rate = 0.09 (14 / 150), avg. gap size = 1.07 (15 / 14)
+ 18 13.4 0.0 0.0 UnnamedSequence 4641 4678 (4322) + (TGTG)n Simple_repeat 1 38 (0) 12
ANNOTATION EVIDENCE: 18 13.40 0.00 0.00 UnnamedSequence 4641 4673 4008 + (TGTG)n Simple_repeat 1 33 0 18 13.40 0.00 0.00 UnnamedSequence 4641 4673 (4008) (TGTG)n#Simple_repeat 1 33 (0) m_b1s252i2 UnnamedSequen 4641 TGTGAGTGTCTGAGTGTGTGTGTGTGTGTCTGT 4673 v v v v (TGTG)n#Simpl 1 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 33 Matrix = Unknown Transitions / transversions = 0.00 (0/4) Gap_init rate = 0.00 (0 / 32), avg. gap size = 0.0 (0 / 0) 12 22.13 0.00 0.00 UnnamedSequence 4647 4678 4003 + (TGTC)n Simple_repeat 1 32 0 12 22.13 0.00 0.00 UnnamedSequence 4647 4678 (4003) (TGTC)n#Simple_repeat 1 32 (0) m_b1s252i3 UnnamedSequen 4647 TGTCTGAGTGTGTGTGTGTGTGTCTGTCTTTC 4678 vv v v v v (TGTC)n#Simpl 1 TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC 32 Matrix = Unknown Transitions / transversions = 0.00 (0/6) Gap_init rate = 0.00 (0 / 31), avg. gap size = 0.0 (0 / 0)
+ 227 15.2 0.0 0.0 UnnamedSequence 4680 4738 (4262) + RLTR20A4 LTR/ERVK 438 496 (89) 13
ANNOTATION EVIDENCE: 227 15.25 0.00 0.00 UnnamedSequence 4680 4738 3943 + RLTR20A4 LTR/ERVK 438 496 89 227 15.25 0.00 0.00 UnnamedSequence 4680 4738 (3943) RLTR20A4#LTR/ERVK 438 496 (89) m_b1s501i4 UnnamedSequen 4680 GTGTGTGTGAGTGTGTGCCTGTGTGTGTGTAAGTCTGTGTGTGTGTGAGT 4729 v iv iv v v RLTR20A4#LTR/ 438 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 487 UnnamedSequen 4730 GTCTGTCTC 4738 v i RLTR20A4#LTR/ 488 GTGTGTTTC 496 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 17.05 Transitions / transversions = 0.50 (3/6) Gap_init rate = 0.00 (0 / 58), avg. gap size = 0.0 (0 / 0)
+ 22 17.3 0.0 0.0 UnnamedSequence 4742 4780 (4220) + (GT)n Simple_repeat 1 39 (0) 14
ANNOTATION EVIDENCE: 22 17.30 0.00 0.00 UnnamedSequence 4742 4780 3901 + (GT)n Simple_repeat 1 39 0 22 17.30 0.00 0.00 UnnamedSequence 4742 4780 (3901) (GT)n#Simple_repeat 1 39 (0) m_b1s252i4 UnnamedSequen 4742 GTGTGTGTGTGTGAGTCTGTGTGAGTCCGTGTGTTTGTG 4780 v v v vi v (GT)n#Simple_ 1 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 39 Matrix = Unknown Transitions / transversions = 0.20 (1/5) Gap_init rate = 0.00 (0 / 38), avg. gap size = 0.0 (0 / 0)
+ 227 16.4 0.0 0.0 UnnamedSequence 4781 4835 (4165) + RLTR20C1_MM LTR/ERVK 426 480 (90) 15
ANNOTATION EVIDENCE: 227 16.36 0.00 0.00 UnnamedSequence 4781 4835 3846 + RLTR20C1_MM LTR/ERVK 426 480 90 227 16.36 0.00 0.00 UnnamedSequence 4781 4835 (3846) RLTR20C1_MM#LTR/ERVK 426 480 (90) m_b1s501i5 UnnamedSequen 4781 AACCTGTGTGAGTCTGTGTGTAAGTGTGTGCCTGGGTGTGTGTGTGTGTC 4830 v v v iv iv v v RLTR20C1_MM#L 426 AACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 475 UnnamedSequen 4831 TGTCT 4835 RLTR20C1_MM#L 476 TGTCT 480 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 18.50 Transitions / transversions = 0.29 (2/7) Gap_init rate = 0.00 (0 / 54), avg. gap size = 0.0 (0 / 0)
+ 18 12.0 0.0 0.0 UnnamedSequence 4840 4866 (4134) + (GT)n Simple_repeat 1 27 (0) 16
ANNOTATION EVIDENCE: 18 12.03 0.00 0.00 UnnamedSequence 4840 4866 3815 + (GT)n Simple_repeat 1 27 0 18 12.03 0.00 0.00 UnnamedSequence 4840 4866 (3815) (GT)n#Simple_repeat 1 27 (0) m_b1s252i5 UnnamedSequen 4840 GTGTGTGTGTGAGTGTGTGAGTGTATG 4866 v v i (GT)n#Simple_ 1 GTGTGTGTGTGTGTGTGTGTGTGTGTG 27 Matrix = Unknown Transitions / transversions = 0.50 (1/2) Gap_init rate = 0.00 (0 / 26), avg. gap size = 0.0 (0 / 0)
+ 297 16.4 0.0 2.4 UnnamedSequence 4873 5295 (3705) C IMPB_01 Satellite (2467) 412 1 17
ANNOTATION EVIDENCE: 266 17.30 0.00 2.47 UnnamedSequence 4873 4955 3726 C IMPB_01 Satellite 1 81 2467 266 17.30 0.00 2.47 UnnamedSequence 4873 4955 (3726) C IMPB_01#Satellite (2467) 81 1 m_b1s551i0 UnnamedSequen 4873 GTATGTGTCTATCTGTCGGTGTGTGGGTGTGCCTGTGTGTGTGAGTGTGT 4922 i v i v -- v iv v C IMPB_01#Satel 81 GTGTGTGTGTGTGTGT--GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 34 UnnamedSequen 4923 GAGTCCGTGTGTGAGTGTATGAGTGTATGTGTG 4955 v ii v ? i v C IMPB_01#Satel 33 GTGTTTGTGTGTGTGTNTGTGTGTGTATGTGTG 1 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 19.96 Transitions / transversions = 0.75 (6/8) Gap_init rate = 0.02 (2 / 82), avg. gap size = 1.00 (2 / 2) 238 18.42 0.00 0.00 UnnamedSequence 4891 4966 3715 C IMPB_01 Satellite 2 77 2471 238 18.42 0.00 0.00 UnnamedSequence 4891 4966 (3715) C IMPB_01#Satellite (2471) 77 2 m_b1s551i1 UnnamedSequen 4891 GTGTGTGGGTGTGCCTGTGTGTGTGAGTGTGTGAGTCCGTGTGTGAGTGT 4940 v iv v v vi v v C IMPB_01#Satel 77 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT 28 UnnamedSequen 4941 ATGAGTGTATGTGTGAGTGTATGAGT 4966 i v i ? v v C IMPB_01#Satel 27 GTGTGTGTGTNTGTGTGTGTATGTGT 2 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 21.48 Transitions / transversions = 0.40 (4/10) Gap_init rate = 0.00 (0 / 75), avg. gap size = 0.0 (0 / 0) 247 18.19 0.00 2.27 UnnamedSequence 4904 4993 3688 C IMPB_01 Satellite 3 90 2458 247 18.19 0.00 2.27 UnnamedSequence 4904 4993 (3688) C IMPB_01#Satellite (2458) 90 3 m_b1s551i2 UnnamedSequen 4904 CCTGTGTGTGTGAGTGTGTGAGTCCGTGTGTGAGTGTATGAGTGTATGTG 4953 v vi? v v -- v i v i C IMPB_01#Satel 90 CCTGAGGANGTGTGTGTGTGTGT--GTGTGTGTGTGTGTGTGTGTGTGTG 43 UnnamedSequen 4954 TGAGTGTATGAGTCTGTGTGTGTGTGTGCCTGTGTGTGTG 4993 v i v i ? iv i C IMPB_01#Satel 42 TGTGTGTGTGTGTTTGTGTGTGTGTNTGTGTGTGTATGTG 3 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 21.43 Transitions / transversions = 0.78 (7/9) Gap_init rate = 0.02 (2 / 89), avg. gap size = 1.00 (2 / 2) 297 16.05 0.00 0.00 UnnamedSequence 4931 5011 3670 C IMPB_01 Satellite 1 81 2467 297 16.05 0.00 0.00 UnnamedSequence 4931 5011 (3670) C IMPB_01#Satellite (2467) 81 1 m_b1s551i3 UnnamedSequen 4931 GTGTGAGTGTATGAGTGTATGTGTGAGTGTATGAGTCTGTGTGTGTGTGT 4980 v i v i v i v v C IMPB_01#Satel 81 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 32 UnnamedSequen 4981 GCCTGTGTGTGTGAGTGTGTGAGTCTGTGTG 5011 ii v? v v C IMPB_01#Satel 31 GTTTGTGTGTGTGTNTGTGTGTGTATGTGTG 1 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 18.32 Transitions / transversions = 0.62 (5/8) Gap_init rate = 0.00 (0 / 80), avg. gap size = 0.0 (0 / 0) 269 17.07 0.00 0.00 UnnamedSequence 4941 5022 3659 C IMPB_01 Satellite 2 83 2465 269 17.07 0.00 0.00 UnnamedSequence 4941 5022 (3659) C IMPB_01#Satellite (2465) 83 2 m_b1s551i4 UnnamedSequen 4941 ATGAGTGTATGTGTGAGTGTATGAGTCTGTGTGTGTGTGTGCCTGTGTGT 4990 ? v i v i v v iv C IMPB_01#Satel 83 ANGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 34 UnnamedSequen 4991 GTGAGTGTGTGAGTCTGTGTGAGTGTATGAGT 5022 vv v v ? v v C IMPB_01#Satel 33 GTGTTTGTGTGTGTGTNTGTGTGTGTATGTGT 2 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 19.98 Transitions / transversions = 0.27 (3/11) Gap_init rate = 0.00 (0 / 81), avg. gap size = 0.0 (0 / 0) 253 15.95 0.00 4.55 UnnamedSequence 4942 5033 3648 C IMPB_01 Satellite 1 88 2460 253 15.95 0.00 4.55 UnnamedSequence 4942 5033 (3648) C IMPB_01#Satellite (2460) 88 1 m_b1s551i5 UnnamedSequen 4942 TGAGTGTATGTGTGAGTGTATGAGTCTGTGTGTGTGTGTGCCTGTGTGTG 4991 vi?i v i ---- iv C IMPB_01#Satel 88 TGAGGANGTGTGTGTGTGTGTG----TGTGTGTGTGTGTGTGTGTGTGTG 43 UnnamedSequen 4992 TGAGTGTGTGAGTCTGTGTGAGTGTATGAGTCTGTGTGTGTG 5033 v v i v ? v v i C IMPB_01#Satel 42 TGTGTGTGTGTGTTTGTGTGTGTGTNTGTGTGTGTATGTGTG 1 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 18.38 Transitions / transversions = 0.75 (6/8) Gap_init rate = 0.04 (4 / 91), avg. gap size = 1.00 (4 / 4) 275 14.29 0.00 0.00 UnnamedSequence 4965 5041 3640 C IMPB_01 Satellite 5 81 2467 275 14.29 0.00 0.00 UnnamedSequence 4965 5041 (3640) C IMPB_01#Satellite (2467) 81 5 m_b1s551i6 UnnamedSequen 4965 GTCTGTGTGTGTGTGTGCCTGTGTGTGTGAGTGTGTGAGTCTGTGTGAGT 5014 v iv v v v v C IMPB_01#Satel 81 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 32 UnnamedSequen 5015 GTATGAGTCTGTGTGTGTGAGTGTATG 5041 v v v ? v C IMPB_01#Satel 31 GTTTGTGTGTGTGTNTGTGTGTGTATG 5 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 16.23 Transitions / transversions = 0.10 (1/10) Gap_init rate = 0.00 (0 / 76), avg. gap size = 0.0 (0 / 0) 246 19.11 0.00 2.25 UnnamedSequence 4982 5072 3609 C IMPB_01 Satellite 2 90 2458 246 19.11 0.00 2.25 UnnamedSequence 4982 5072 (3609) C IMPB_01#Satellite (2458) 90 2 m_b1s551i7 UnnamedSequen 4982 CCTGTGTGTGTGAGTGTGTGAGTCTGTGTGAGTGTATGAGTCTGTGTGTG 5031 v vi? v v v v i v v C IMPB_01#Satel 90 CCTGAGGANGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 41 UnnamedSequen 5032 TGAGTGTATGCCTGGTTGTGAGTGTGTGAGAGTGTATGTGT 5072 v i ii -- v ? v v C IMPB_01#Satel 40 TGTGTGTGTGTTTG--TGTGTGTGTNTGTGTGTGTATGTGT 2 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 22.65 Transitions / transversions = 0.42 (5/12) Gap_init rate = 0.02 (2 / 90), avg. gap size = 1.00 (2 / 2) 237 13.65 0.00 7.41 UnnamedSequence 5017 5103 3578 C IMPB_01 Satellite 3 83 2465 237 13.65 0.00 7.41 UnnamedSequence 5017 5103 (3578) C IMPB_01#Satellite (2465) 83 3 m_b1s551i8 UnnamedSequen 5017 ATGAGTCTGTGTGTGTGAGTGTATGCCTGGTTGTGAGTGTGTGAGAGTGT 5066 ? v v v i iv -- v v v C IMPB_01#Satel 83 ANGTGTGTGTGTGTGTGTGTGTGTGTGTG--TGTGTGTGTGTGTGTGTGT 36 UnnamedSequen 5067 ATGTGTCTGTGTGTGTGTGTGTGAGCCTGTGTATGTG 5103 i i ? ---- C IMPB_01#Satel 35 GTGTGTTTGTGTGTGTGTNTGTG----TGTGTATGTG 3 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 15.40 Transitions / transversions = 0.57 (4/7) Gap_init rate = 0.07 (6 / 86), avg. gap size = 1.00 (6 / 6) 266 18.18 0.00 0.00 UnnamedSequence 5048 5135 3546 C IMPB_01 Satellite 1 88 2460 266 18.18 0.00 0.00 UnnamedSequence 5048 5135 (3546) C IMPB_01#Satellite (2460) 88 1 m_b1s551i9 UnnamedSequen 5048 TGTGAGTGTGTGAGAGTGTATGTGTCTGTGTGTGTGTGTGTGAGCCTGTG 5097 v ii? v v i v v iv C IMPB_01#Satel 88 TGAGGANGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 39 UnnamedSequen 5098 TATGTGAGTCTGTGTGTGTGTTAGTGTGTGTGAGTGTG 5135 i v i ?v iv C IMPB_01#Satel 38 TGTGTGTGTTTGTGTGTGTGTNTGTGTGTGTATGTGTG 1 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 21.43 Transitions / transversions = 0.78 (7/9) Gap_init rate = 0.00 (0 / 87), avg. gap size = 0.0 (0 / 0) 236 14.80 0.00 4.55 UnnamedSequence 5058 5149 3532 C IMPB_01 Satellite 1 88 2460 236 14.80 0.00 4.55 UnnamedSequence 5058 5149 (3532) C IMPB_01#Satellite (2460) 88 1 m_b1s551i10 UnnamedSequen 5058 TGAGAGTGTATGTGTCTGTGTGTGTGTGTGTGAGCCTGTGTATGTGAGTC 5107 ii? i -- v iv i v v C IMPB_01#Satel 88 TGAGGANGTGTGTGT--GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 41 UnnamedSequen 5108 TGTGTGTGTGTTAGTGTGTGTGAGTGTGAGCCTGTGTGTGTG 5149 v v? v -- i C IMPB_01#Satel 40 TGTGTGTGTGTTTGTGTGTGTGTNTGTGTG--TGTATGTGTG 1 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 16.92 Transitions / transversions = 0.86 (6/7) Gap_init rate = 0.04 (4 / 91), avg. gap size = 1.00 (4 / 4) 286 18.28 0.00 0.00 UnnamedSequence 5089 5181 3500 C IMPB_01 Satellite 1 93 2455 286 18.28 0.00 0.00 UnnamedSequence 5089 5181 (3500) C IMPB_01#Satellite (2455) 93 1 m_b1s551i11 UnnamedSequen 5089 GAGCCTGTGTATGTGAGTCTGTGTGTGTGTTAGTGTGTGTGAGTGTGAGC 5138 v v v ? v v vv v v i C IMPB_01#Satel 93 GATCCTGAGGANGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 44 UnnamedSequen 5139 CTGTGTGTGTGAGTCTGTGTGAGTGTATGAGTCTGTGTGTGTG 5181 v v i v ? v v i C IMPB_01#Satel 43 GTGTGTGTGTGTGTTTGTGTGTGTGTNTGTGTGTGTATGTGTG 1 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 21.60 Transitions / transversions = 0.21 (3/14) Gap_init rate = 0.00 (0 / 92), avg. gap size = 0.0 (0 / 0) 234 18.61 0.00 2.33 UnnamedSequence 5148 5235 3446 C IMPB_01 Satellite 3 88 2460 234 18.61 0.00 2.33 UnnamedSequence 5148 5235 (3446) C IMPB_01#Satellite (2460) 88 3 m_b1s551i12 UnnamedSequen 5148 TGAGTCTGTGTGAGTGTATGAGTCTGTGTGTGTGAGTGTATGCCTGGTTG 5197 vv? v i v v v i iv -- C IMPB_01#Satel 88 TGAGGANGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG--TG 41 UnnamedSequen 5198 TGAGTGTGTGAGAGTGTGTGTATCTGTGTGTGTGTGTG 5235 v vvv i ? i C IMPB_01#Satel 40 TGTGTGTGTGTTTGTGTGTGTGTNTGTGTGTGTATGTG 3 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 21.98 Transitions / transversions = 0.45 (5/11) Gap_init rate = 0.02 (2 / 87), avg. gap size = 1.00 (2 / 2) 228 17.50 0.00 0.00 UnnamedSequence 5196 5275 3406 C IMPB_01 Satellite 1 80 2468 228 17.50 0.00 0.00 UnnamedSequence 5196 5275 (3406) C IMPB_01#Satellite (2468) 80 1 m_b1s551i13 UnnamedSequen 5196 TGTGAGTGTGTGAGAGTGTGTGTATCTGTGTGTGTGTGTGAGAGCCTGTG 5245 v v v i v v v iv C IMPB_01#Satel 80 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 31 UnnamedSequen 5246 TGTGTGAGTCTGTGTGTGTGTGTTAGTGTG 5275 v v v ? vv C IMPB_01#Satel 30 TTTGTGTGTGTGTNTGTGTGTGTATGTGTG 1 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 20.37 Transitions / transversions = 0.17 (2/12) Gap_init rate = 0.00 (0 / 79), avg. gap size = 0.0 (0 / 0) 253 12.82 0.00 4.65 UnnamedSequence 5206 5295 3386 C IMPB_01 Satellite 3 88 2460 253 12.82 0.00 4.65 UnnamedSequence 5206 5295 (3386) C IMPB_01#Satellite (2460) 88 3 m_b1s551i14 UnnamedSequen 5206 TGAGAGTGTGTGTATCTGTGTGTGTGTGTGAGAGCCTGTGTGTGTGAGTC 5255 ii? i v v ---- v v C IMPB_01#Satel 88 TGAGGANGTGTGTGTGTGTGTGTGTGTGTGTG----TGTGTGTGTGTGTG 43 UnnamedSequen 5256 TGTGTGTGTGTGTTAGTGTGTGTGAGTCTGTGTGTGTGTG 5295 v v? v i C IMPB_01#Satel 42 TGTGTGTGTGTGTTTGTGTGTGTGTNTGTGTGTGTATGTG 3 Matrix = 20p51g.matrix Kimura (with divCpGMod) = 14.39 Transitions / transversions = 0.57 (4/7) Gap_init rate = 0.04 (4 / 89), avg. gap size = 1.00 (4 / 4)
+ 543 31.7 4.5 4.5 UnnamedSequence 5302 5499 (3501) C B4 SINE/B4 (2) 290 93 18
ANNOTATION EVIDENCE: 543 31.74 4.55 4.55 UnnamedSequence 5302 5499 3182 C B4 SINE/B4 93 290 2 543 31.74 4.55 4.55 UnnamedSequence 5302 5499 (3182) C B4#SINE/B4 (2) 290 93 m_b1s501i6 UnnamedSequen 5302 TGTACATGTGACTGCCTATGAAAGCCAAACATCAGCCTTGGGTGTTGTTC 5351 iii vv v i i i i vi? i i i C B4#SINE/B4 290 TGTGTGTGTGCGTGCGTGTGGAGGCCAGAGGNCAACCTCGGGTGTCGTTC 241 UnnamedSequen 5352 TTCAGGTGCC-TCTACAACATTTTT-GAGATGGGTTCTCTCTCTCTCAGG 5399 i i - i vvii - ii v v ---- C B4#SINE/B4 240 CTCAGGCGCCGTCCACCTTGTTTTTTGAGACAGGGTCTCTCACT----GG 195 UnnamedSequen 5400 CC-AGAACTGGCCAAGTAGGCCAGCCTGGATAGCTACTTAGCTCTCCTCC 5448 -i i v i i v v i i viv i ----- C B4#SINE/B4 194 CCTGGAGCTCGCCGAGTAGGCTAGGCTGGCTGGCCAGCGAGCCC-----C 150 UnnamedSequen 5449 CAGAATCCATCTGTCTTA------CTGATGCCAAGATTACAAGTGTATGC 5492 vi i ii iv------ iiii iii i iii C B4#SINE/B4 149 AGGGATCCGCCTGTCTCTGCCTCCCCAGCGCTGGGATTACAAGCGCGCGC 100 UnnamedSequen 5493 CTTCATG 5499 vi i C B4#SINE/B4 99 CACCACG 93 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 34.27 Transitions / transversions = 2.75 (44/16) Gap_init rate = 0.07 (13 / 197), avg. gap size = 1.38 (18 / 13)
+ 188 30.0 0.0 0.0 UnnamedSequence 6905 6954 (2046) + MIR SINE/MIR 20 69 (193) 19
ANNOTATION EVIDENCE: 188 30.00 0.00 0.00 UnnamedSequence 6905 6954 1727 + MIR SINE/MIR 20 69 193 188 30.00 0.00 0.00 UnnamedSequence 6905 6954 (1727) MIR#SINE/MIR 20 69 (193) m_b1s601i2 UnnamedSequen 6905 AATAGGACAGACTCTGGAGTCATGTTGACTGGGTTTGAGTCATTACTCTG 6954 v v i i i vii v i i vivi MIR#SINE/MIR 20 AAGAGCACGGGCTCTGGAGCCAGACTGCCTGGGTTCGAATCCCGGCTCTG 69 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 30.12 Transitions / transversions = 1.50 (9/6) Gap_init rate = 0.00 (0 / 49), avg. gap size = 0.0 (0 / 0)
+ 388 28.5 15.3 3.4 UnnamedSequence 7585 7731 (1269) C ORR1F LTR/ERVL-MaLR (0) 391 224 20
ANNOTATION EVIDENCE: 388 28.50 15.31 3.35 UnnamedSequence 7585 7731 1126 C ORR1F LTR/ERVL-MaLR 224 391 0 388 28.50 15.31 3.35 UnnamedSequence 7585 7731 (1126) C ORR1F#LTR/ERVL-MaLR (0) 391 224 m_b1s501i7 UnnamedSequen 7585 TATCAGCCACTTCGCACTGCTGTAACCACATGCCTGTGACGCTGAA---- 7630 i --- iv iii i v v i v iiv v ---- C ORR1F#LTR/ERV 391 TGTCAGC---TTTCCGTCGCTGTGACAAAATACCTGAGATAATCAACTTA 345 UnnamedSequen 7631 --AGGAGGAAGGAGGTATTTTGGCTCCCAGTTTCAGGGAGTTCTGTC--A 7676 -- i i ivv v i i i iv v --v C ORR1F#LTR/ERV 344 TAAAGAGGAAAGGTTTATTTTGGCTCACGGTTTCGGAGGTTTCAGTCCAT 295 UnnamedSequen 7677 GGT------GC----TTGATCTCAGGCATTT----AGTTAGAACTCTGTG 7712 ------ ---- v i ii v v ---- vi ? viii C ORR1F#LTR/ERV 294 GGTCGGTTGGCTCCGTTGCTTTTGGGCCTGTGGCGAGGCAGNACATCATG 245 UnnamedSequen 7713 GGAGGTGAGCGCGTGGCA----C 7731 vi -- i ----v C ORR1F#LTR/ERV 244 GCGG--GAGCGCGTGGTAGAGGA 224 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 34.01 Transitions / transversions = 1.32 (25/19) Gap_init rate = 0.08 (12 / 146), avg. gap size = 2.58 (31 / 12)
+ 1127 6.2 0.0 2.8 UnnamedSequence 7732 7743 (1257) C B1_Mm SINE/Alu (3) 144 136 21
ANNOTATION EVIDENCE: 1127 6.25 0.00 2.78 UnnamedSequence 7732 7743 1257 C B1_Mm SINE/Alu 136 144 3 1127 6.25 0.00 2.78 UnnamedSequence 7732 7743 (1257) C B1_Mm#SINE/Alu (3) 144 136 c_b1s355i2 UnnamedSequen 7732 TGTTCTTCCCTC 7743 i i --- C B1_Mm#SINE/Al 144 TGTTTTTTC--- 136 Matrix = 18p51g.matrix Kimura (with divCpGMod) = 5.19 Transitions / transversions = 1.00 (2/0) Gap_init rate = 0.27 (3 / 11), avg. gap size = 1.00 (3 / 3)
+ 32 0.0 0.0 0.0 UnnamedSequence 7744 7773 (1227) + (T)n Simple_repeat 1 30 (0) 22
ANNOTATION EVIDENCE: 32 0.00 0.00 0.00 UnnamedSequence 7744 7773 1227 + (T)n Simple_repeat 1 30 0 32 0.00 0.00 0.00 UnnamedSequence 7744 7773 (1227) (T)n#Simple_repeat 1 30 (0) c_b1s251i1 UnnamedSequen 7744 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7773 (T)n#Simple_r 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30 Matrix = Unknown Transitions / transversions = 1.00 (0/0) Gap_init rate = 0.00 (0 / 29), avg. gap size = 0.0 (0 / 0)
+ 1127 6.2 0.0 2.8 UnnamedSequence 7774 7908 (1092) C B1_Mm SINE/Alu (12) 135 1 21
ANNOTATION EVIDENCE: 1127 6.25 0.00 2.78 UnnamedSequence 7774 7908 1092 C B1_Mm SINE/Alu 1 135 12 1127 6.25 0.00 2.78 UnnamedSequence 7774 7908 (1092) C B1_Mm#SINE/Alu (12) 135 1 c_b1s355i2 UnnamedSequen 7774 GAGACAGGGTTTCTCTGTATAGCCCTGGTTGTCCTGGAACTCACTTTGTA 7823 i C B1_Mm#SINE/Al 135 GAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTA 86 UnnamedSequen 7824 GACCAGGCTGGCCTCCAACTCAGAAATCTGCATGCCTCTGCCTCCGGAGT 7873 v i v v C B1_Mm#SINE/Al 85 GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGT 36 UnnamedSequen 7874 GCTGGGACTAAAGGTGTGCGCCACCACGCCCGGCT 7908 i i C B1_Mm#SINE/Al 35 GCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCT 1 Matrix = 18p51g.matrix Kimura (with divCpGMod) = 5.19 Transitions / transversions = 1.33 (4/3) Gap_init rate = 0.00 (0 / 134), avg. gap size = 0.0 (0 / 0)
+ 388 28.5 15.3 3.4 UnnamedSequence 7909 8054 (946) C ORR1F LTR/ERVL-MaLR (168) 223 65 20
ANNOTATION EVIDENCE: 388 28.50 15.31 3.35 UnnamedSequence 7909 8054 803 C ORR1F LTR/ERVL-MaLR 65 223 168 388 28.50 15.31 3.35 UnnamedSequence 7909 8054 (803) C ORR1F#LTR/ERVL-MaLR (168) 223 65 m_b1s501i7 UnnamedSequen 7909 CTTGTTCTTCCCTTTTGAAGAAGCAG--AGGGAGAAAGGGAATTATAAGA 7956 vi -- iv iv v -- -- i v i i ivvi? C ORR1F#LTR/ERV 223 GCTG--CTCACCTCATGATG--GCAGCCAGGAAGCAAAGAAGAAGNAAGA 178 UnnamedSequen 7957 AAGCACCAG---GCAAACAGTGACCCCCAAGGACAATCCCTCACT---CT 8000 i v? i ---? vv -v ii i? vv i v --- C ORR1F#LTR/ERV 177 AGGGNCCGGAGTNCCCACAGT-CCCCTTAAGGGNACGCCCCCAGTGACCT 129 UnnamedSequen 8001 A--TCCCTT-------TAGTAGAGCCCCACCTCCT--AGCTCTCACCACC 8039 -- i -------? v - -- v ii C ORR1F#LTR/ERV 128 AACTTCCTTCCANCGNNACTAG-GCCCCACCTCCTAAAGGTTCCACCACC 80 UnnamedSequen 8040 TCCCTATGATGCCAC 8054 v iii C ORR1F#LTR/ERV 79 TCCCAATAGCGCCAC 65 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 34.01 Transitions / transversions = 1.18 (20/17) Gap_init rate = 0.08 (12 / 145), avg. gap size = 2.08 (25 / 12)
+ 269 30.6 7.7 5.2 UnnamedSequence 8460 8628 (372) C MLT1L LTR/ERVL-MaLR (6) 604 432 23
ANNOTATION EVIDENCE: 269 30.58 7.69 5.20 UnnamedSequence 8460 8628 229 C MLT1L LTR/ERVL-MaLR 432 604 6 269 30.58 7.69 5.20 UnnamedSequence 8460 8628 (229) C MLT1L#LTR/ERVL-MaLR (6) 604 432 m_b1s501i8 UnnamedSequen 8460 AGTCTGGCTGCTTTCAGCTGCAGGTGACAGAAAACCCAACA------GGG 8503 iv v i i i v------ v C MLT1L#LTR/ERV 604 AGTTAGGATGCTTTCGGCTGCAAGTAACAGAAAACCCAACTCAAANTGGC 555 UnnamedSequen 8504 TCACACAGACAGGAACGGCCGATTCTGCGGCCATGTTTGGGAGTTGCCAG 8553 i v ivv -iiiiv v - vvv ivivi i -- i C MLT1L#LTR/ERV 554 TTAAACAATAAGGAA-AATTTATTAT-CTCACATAACAAGAAGT--CCGG 509 UnnamedSequen 8554 TAGGTGTGGCCAGCTTCAGGGAAAGGCAATGCAG-AGTTCAAAG------ 8596 - iv -i i i vvi vi v -i i v ------ C MLT1L#LTR/ERV 508 -AGGTAGGGC-GGTTCCAGGGTTGGTTAATTCAGCGGCTCAACGATGTCA 461 UnnamedSequen 8597 TCAAGTACCTCATTTCTTTCCAGTCTCCTTCC 8628 v iviv --- i C MLT1L#LTR/ERV 460 TCAAGGACCCAGGTTCTTTCCA---TCTTTCC 432 Matrix = 25p51g.matrix Kimura (with divCpGMod) = 36.04 Transitions / transversions = 1.13 (26/23) Gap_init rate = 0.07 (11 / 168), avg. gap size = 2.00 (22 / 11)
+ 887 14.7 1.4 0.7 UnnamedSequence 8822 8965 (35) C B1_Mur3 SINE/Alu (0) 149 5 24
ANNOTATION EVIDENCE: 887 14.68 1.39 0.69 UnnamedSequence 8822 8965 35 C B1_Mur3 SINE/Alu 5 149 0 887 14.68 1.39 0.69 UnnamedSequence 8822 8965 (35) C B1_Mur3#SINE/Alu (0) 149 5 c_b1s355i3 UnnamedSequen 8822 TTTTGTTTTTC-AAGACAAGGTTTCTCTTTGTCATCTTGCCTGTCCTGGA 8870 i-i i v vii i v C B1_Mur3#SINE/ 149 TTTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGA 100 UnnamedSequen 8871 ACTC-CTCTGGAGACCAGGCTGGTCTGGAACTCACAAGAGATCTACCTGC 8919 - v i v - ii C B1_Mur3#SINE/ 99 ACTCGCTCTGTAGACCAGGCTGGCCTCGAACTCACA-GAGATCCGCCTGC 51 UnnamedSequen 8920 CTCTGCCTCCTGAGTGCTGGGATTAAGGACATGTGCCCCCATGCCC 8965 i i i i i v i C B1_Mur3#SINE/ 50 CTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCC 5 Matrix = 18p51g.matrix Kimura (with divCpGMod) = 12.57 Transitions / transversions = 2.50 (15/6) Gap_init rate = 0.02 (3 / 143), avg. gap size = 1.00 (3 / 3)