
                                          position in query-                       -position in repeat-
          %    %    %    query                               C matching repeat     (left)  end   begin  linkage
+ score  div. del. ins.  sequence         begin  end  (left) + repeat   class/fami begin   end   (left) id/graphic

+  408    9.5  0.0  0.0  UnnamedSequence      1    63   (28) + RLTR4_Mm LTR/ERV1      680    742    (0)   1

ANNOTATION EVIDENCE:
  408   9.52 0.00 0.00  UnnamedSequence      1    63     28 + RLTR4_Mm LTR/ERV1      680    742      0    
408 9.52 0.00 0.00 UnnamedSequence 1 63 (28) RLTR4_Mm#LTR/ERV1 680 742 (0) m_b1s501i0

  UnnamedSequen          1 GTCTCGCTGATCCTTGGGAGGGTCTCCTCAGAGTGATTGACTGCCCAGCC 50
                                    i                      v         i    v i
  RLTR4_Mm#LTR/        680 GTCTCGCTGGTCCTTGGGAGGGTCTCCTCAGATTGATTGACTACCCACCT 729

  UnnamedSequen         51 TGGGGGTCTTTCA 63
                           i            
  RLTR4_Mm#LTR/        730 CGGGGGTCTTTCA 742

Matrix = 25p43g.matrix
Kimura (with divCpGMod) = 8.61
Transitions / transversions = 2.00 (4/2)
Gap_init rate = 0.00 (0 / 62), avg. gap size = 0.0 (0 / 0)