+ 993 25.9 5.9 4.7 UnnamedSequence 1 357 (2557) + Lx6 LINE/L1 7095 7455 (5) 1
ANNOTATION EVIDENCE:
993 25.87 5.88 4.71 UnnamedSequence 1 357 2532 + Lx6_3end LINE/L1 1509 1869 5
993 25.87 5.88 4.71 UnnamedSequence 1 357 (2532) Lx6_3end#LINE/L1 1509 1869 (5) m_b1s551i0
UnnamedSequen 1 CAGATCTCCACCATGTCTTTTGTTTACATGTTGTGAATTCCAGTTTAA-- 48
i i v v i i iv i i i iv i i i--
Lx6_3end#LINE 1509 CGGGTCTGCACCAGGTCCTCTGCGTATATATTATGGCTTTCAGCTTAGTG 1558
UnnamedSequen 49 -------GGATTTCCTGAGAATGCCAACAAATGGGCGTGTCTCT--TTTT 89
------- ivi vi ?v i i ---- -- i
Lx6_3end#LINE 1559 TTTTTATGGGACTCCTGAGTGTGNGAACGAGTGGG----TCTCTGATTCT 1604
UnnamedSequen 90 TGTGCATTCACTTGGG-CTCTTTTCTTTCTC----ATTGATTTATTCAAT 134
v ? v - i i v----? vi i i i
Lx6_3end#LINE 1605 TGTGCCTNCTCTTGGGACTCTTTTCCTCCTGTTGGNTTGCCTTGTCCAAC 1654
UnnamedSequen 135 TCCAATGTGTTTGTTTTTGTTTCATCTTATTACATATCATTATTTTATGA 184
i i v?v i i i - -- i --
Lx6_3end#LINE 1655 TTCGATGTGANGGTTTTTGCTTTATCTTATTATAT-T--TTATTTTGT-- 1699
UnnamedSequen 185 TCCCTTATGTTATGATAATGATCCCTTATAAGTCTGTT---TTCTAATGA 231
-----i - i vi v i v i ---
Lx6_3end#LINE 1700 -----CATGTT-TGGTTGTTATCTCTTAGAAGCCTGTTCTTTTCTAATGA 1743
UnnamedSequen 232 GAAACAGAAAAGTAGTGGGTTCAGATGAAAGGAAAAGTAGAGGAAAGGCT 281
i i v i i i v ii ii i - i iiii
Lx6_3end#LINE 1744 GAGACAGAAAGGGAGTGGATCCGGAGGGGAGGGGAGGT-GGGGAGGAACT 1792
UnnamedSequen 282 GGGAGGA--AAGGGCATTGGAGACTAAAATTAGGATATACTATCTGAGAG 329
-- ii v vv i iv i i i v i
Lx6_3end#LINE 1793 GGGAGGAGTAGAGGGAGGGGAAACTGTAATCAGGATATATTGTATGAGAA 1842
UnnamedSequen 330 GGGAAATCTGTTTTTAATAAATGGAAAA 357
ii - i i v i i
Lx6_3end#LINE 1843 AAG-AATCTATTTTCAATAAAAGAAGAA 1869
Matrix = 20p35g.matrix
Kimura (with divCpGMod) = 31.57
Transitions / transversions = 2.67 (64/24)
Gap_init rate = 0.07 (24 / 356), avg. gap size = 1.58 (38 / 24)
+ 351 34.2 5.9 2.6 UnnamedSequence 397 582 (2332) + L1_Mur3 LINE/L1 205 396 (7332) 2
ANNOTATION EVIDENCE:
351 34.22 5.91 2.60 UnnamedSequence 397 582 2307 + L1_Mur3_5end LINE/L1 189 380 948
351 34.22 5.91 2.60 UnnamedSequence 397 582 (2307) L1_Mur3_5end#LINE/L1 189 380 (948) m_b1s551i1
UnnamedSequen 397 ACTCAGGCCATCCTTTTTTAACCTTCCTCTCCTAACCTGTCACTGTCTCT 446
v ii v ii iiv i i i iv iii i v v i
L1_Mur3_5end# 189 ACACAGATCTTCCCCTCCAAACTTCCCTCCCCCCACTCATCGCTTTATCC 238
UnnamedSequen 447 TAGCCCCAAACTCCAGCAGATACCCCTTTTGAA-CTACATGCCA------ 489
i v ii ii i vv - ii v ------
L1_Mur3_5end# 239 CAGCCCCCAACTCCAGCAGGCATTCCCTGGGAACCCGCAGGCCACTCCGG 288
UnnamedSequen 490 ----GAAAACAAGGTAAACAGCCTGCAGACTTTCTCCTCTCTCTGTGTTC 535
---- i i - ii viv ii v i vivi
L1_Mur3_5end# 289 CCAGGGAAGC-AGGTAGGCTAACTGCAGATCTTCACCTCTCCCTCCTCTC 337
UnnamedSequen 536 TCCTAAAACTAGTCCCAAAATTTAATCCCTAGTGCTGCAACTAGCAG 582
ii i v i i vv i i v i iv ----
L1_Mur3_5end# 338 CTCCAAATCCAATCCCCCAGTCTCATCCCCAGCTCTG----TAGCAG 380
Matrix = 20p35g.matrix
Kimura (with divCpGMod) = 46.57
Transitions / transversions = 2.10 (42/20)
Gap_init rate = 0.04 (8 / 185), avg. gap size = 2.00 (16 / 8)
+ 1702 25.5 6.0 2.0 UnnamedSequence 612 1500 (1414) + L1_Mur3 LINE/L1 571 1500 (4380) 2
ANNOTATION EVIDENCE:
1702 27.55 8.01 1.59 UnnamedSequence 612 1323 1566 + L1_Mur3_5end LINE/L1 555 1311 17
1702 27.55 8.01 1.59 UnnamedSequence 612 1323 (1566) L1_Mur3_5end#LINE/L1 555 1311 (17) m_b1s551i2
UnnamedSequen 612 CAGATTCACATCTCTCCTACTGCTCCTG-AGATACAGGATCCCAGGGTCA 660
iiv i iv i? v- i v ivvi vv
L1_Mur3_5end# 555 CAGATCTTCACCTCTCCCTCCNCTCCTCCAAATCCAATCCCCCAGTCTCA 604
UnnamedSequen 661 TTCCAAACTCTGCAGCAG--CAATCCAAATGTGGTCTCCCTTTCTTCTCT 708
i v i i -- -- viv i i i ivi
L1_Mur3_5end# 605 TCCCCAGCTCTGTAGCAGACCA--CCTGCTGTGGCCTCTCCTCACTCTCT 652
UnnamedSequen 709 GACTCCATCCTTA----------CAGATCA----GAGAGACCTTCTTCTC 744
v i i ii ---------- v---- ii v i vi i
L1_Mur3_5end# 653 GCCCCCATTCCCAGGGGACTAAGCAGATCCTGGTGGAACACCCTGCTTTC 702
UnnamedSequen 745 CAGCATCCT-----TCCTCTCAACACATGCCAC--CAA---CATCCCCAT 784
vv v -----i i i v iv v -- v ---
L1_Mur3_5end# 703 CTCCCTCCTGTGGACCCCCTCAGCTCACCCCCCTCCTAGCCCATCCCCAT 752
UnnamedSequen 785 AACTTGGGGAACTATCTCAAGTTCCAACATCTA----CAGGTATTGCCTG 830
vv vi v ------- iv i i i ---- vi v i i
L1_Mur3_5end# 753 TCCTAAGTG-------TCAGCTCCCAATACCTAGAAACACATTTTACCCG 795
UnnamedSequen 831 AGAAAAC--AGCAGCTG-----GGCAGG---CAAGGAAAAT-------CA 863
- vv -- ii ii-----i? --- v i i -------
L1_Mur3_5end# 796 -GAACCCCCAGTGGCCACACCTANCAGGATCCCAGAAGAATTTCCTACCA 844
UnnamedSequen 864 A-CAACACA-AGGCATCACACTATCTGCAAATTCAGAGAATATA-CAGAA 910
i- - v i v ivv i vi ivii -
L1_Mur3_5end# 845 GGCAACACACAGCCACCACACTCTCCTAAGAACCAGAGAGGGCAACAGAA 894
UnnamedSequen 911 AAAAAGTGGATAAAATATCCACTCACCTAAAACAAATCCCAAAGTCAGCA 960
vv - i i i i i v v i iv vi vi
L1_Mur3_5end# 895 ACCAAG-GAACAAAACACCCACCCAACAAAGACAAGACCAGATATCAGCA 943
UnnamedSequen 961 CCTAGACATATAATGATTCTAAACCCAGATGCCTAGAC-CCAACATAAAA 1009
vv i v? i i - i i
L1_Mur3_5end# 944 CCTAGAATTACAATCNTCCCAAACCCAGATGCCTAGACGCCAGCGTAAAA 993
UnnamedSequen 1010 ATGAAAACAATAGTAGTCAGGGTGTTATGTATACAACATAGTCCATCTAT 1059
iiv v ii i iiiv v v vi v i v v i
L1_Mur3_5end# 994 ACACAATCAATAACAGCCAGGACAATATGTCTCCACTAGAGCCCAGCAAC 1043
UnnamedSequen 1060 CCTCCCATGGCAGGCATTGACTATTCCAACATAGCTGAAGCACAAGACAA 1109
v ii vi v? ? ?
L1_Mur3_5end# 1044 CCTACCACAGCAGGCCCTGAGNATTNCAACATAGCTGAAGCACAAGANAA 1093
UnnamedSequen 1110 AGAATGTTAAAATGATTT----GAAGATGGTAAAGATCCTTAAAGAGTAA 1155
-iv iiii ---- v i i i v
L1_Mur3_5end# 1094 AGA-CCTTAAAATAGCCTTTATGAATATGATAGAGGTCCTTAAAGAGGAA 1142
UnnamedSequen 1156 ATGAATTAATCCCTTAAAGAAATCCAAGAAAATACGAACAATGATCTGAA 1205
v i v i i vv viv
L1_Mur3_5end# 1143 ATGAATAAATCCCTTAAAGAAATCTATGAAAACACAAACAAACAGTGGAA 1192
UnnamedSequen 1206 AAGCACATATACAACTATTCAAGACTTGAAAGTGGGTATAGAATTGATAA 1255
iiiv iiv v ?i i iv ii
L1_Mur3_5end# 1193 GGAAATGAATAAAACNGTTCAAGACCTGAAAGTGGAAATAGAATCAATAA 1242
UnnamedSequen 1256 ATAAAACAGATACTGAGAGAATTGTGGAAA-GGAAAAGTTAGAAATTTGA 1304
v vv v i v v - i v i i i
L1_Mur3_5end# 1243 AGAAAACCCAAACTGAGGGAAATCTGGAAATGAAAAATTTAGGAACTCGA 1292
UnnamedSequen 1305 ACAGGAATTCCAGAAGAAA 1323
ii? i v
L1_Mur3_5end# 1293 ACAGGAACCNCAGAGGCAA 1311
Matrix = 20p35g.matrix
Kimura (with divCpGMod) = 35.00
Transitions / transversions = 1.35 (111/82)
Gap_init rate = 0.04 (30 / 711), avg. gap size = 2.30 (69 / 30)
1076 21.16 1.74 2.82 UnnamedSequence 1214 1500 1389 + L1_Mur3_orf2 LINE/L1 15 298 4380
1076 21.16 1.74 2.82 UnnamedSequence 1214 1500 (1389) L1_Mur3_orf2#LINE/L1 15 298 (4380) m_b1s551i3
UnnamedSequen 1214 ATACAACTATTCAAGACTTGAAAGTGGGTATAGAATTGATAAATAAAACA 1263
v ?i i iv ii v v
L1_Mur3_orf2# 15 ATAAAACNGTTCAAGACCTGAAAGTGGAAATAGAATCAATAAAGAAAACC 64
UnnamedSequen 1264 GATACTGAGAGAATTGTGGAAAGGAAAAGTT-AGAAATTTGAACAGGAAT 1312
v v i v v v i - i ? i i
L1_Mur3_orf2# 65 CAAACTGAGGGAAATCTGGAAATGAAAAATTTAGGAANTCGAACAGGAAC 114
UnnamedSequen 1313 TCCAGAAGAAATACAGAGAAATTCCCCTAAAAAACACAAAAAATTGAAGA 1362
i? i v vv -------- v v v i i i i v
L1_Mur3_orf2# 115 CNCAGAGGCAAGCC--------TCACCAACAGAATACAAGAGATGGAAGA 156
UnnamedSequen 1363 GAAAGTCTTAGGAGTTGGAGATACAATAGAAGCAATTGATAAATTAGTCA 1412
i i i v i i i v v v? ii
L1_Mur3_orf2# 157 GAGAATCTCAGGCGTTGAAGACACGATAGAAGAAATGGATACNTCGGTCA 206
UnnamedSequen 1413 AAGGAAATGTAAAATCTAAAAACA----TCTGACACAAATCATCCCGGAC 1458
i v v ----i i v v v
L1_Mur3_orf2# 207 AAGAAAATGTTAAATCTAAAAAAAANNTCCTGGCACAAAACATCCAGGAA 256
UnnamedSequen 1459 ATCTATTACACTGTGAAAAGACCAAACATATGAATAATAGGA 1500
iivv i v v
L1_Mur3_orf2# 257 ATCCGGGACACTATGAAAAGACCAAACCTAAGAATAATAGGA 298
Matrix = 20p35g.matrix
Kimura (with divCpGMod) = 23.47
Transitions / transversions = 1.03 (30/29)
Gap_init rate = 0.03 (10 / 286), avg. gap size = 1.30 (13 / 10)
+ 5290 20.2 5.7 1.7 UnnamedSequence 1502 1963 (951) + L1_Mur3 LINE/L1 1616 2107 (3773) 2
ANNOTATION EVIDENCE:
5290 20.25 5.67 1.68 UnnamedSequence 1502 1963 951 + L1_Mur3_orf2 LINE/L1 414 905 3773
5290 20.25 5.67 1.68 UnnamedSequence 1502 1963 (951) L1_Mur3_orf2#LINE/L1 414 905 (3773) m_b1s551i4
UnnamedSequen 1502 ACAGATCGCCAGATAGATTGGACCAGAAAAGG--GTCATTTTGCCACATA 1549
v i i i i--? vii i ?
L1_Mur3_orf2# 414 ACAGAACACCAAATAGACTGGACCAGAAAAGAAANTCCCCTCGNCACATA 463
UnnamedSequen 1550 ATAATCAAAATGCTAA-TGTACAGAATAAAAATA---TATTAAAAGCTAT 1595
ii -i i i v --- ii
L1_Mur3_orf2# 464 ATAATCAAAACACTAAACGTACAGAACAAAGAAAGAATATTAAAAGCTGC 513
UnnamedSequen 1596 GAAGGAAAATTACCAACTAACATA--AAGAGAGACCTGA-GGAATTACAC 1642
i i vv v -- iv iv-i ?
L1_Mur3_orf2# 514 AAGGGAAAAAGACCAAGTAACATATAAAGGCAGACCTATTAGAATNACAC 563
UnnamedSequen 1643 CTGATTTTTCAATAGAGAATCTGAGAGTTACAAATGGCCTGGAAATATCT 1692
i i ii v i i ii v i- v v v
L1_Mur3_orf2# 564 CTGACTTCTCAACGGAGACTCTAAAAGCCAGAAG-GGCCTGGACAGATGT 612
UnnamedSequen 1693 GCTGCAGATTGTATGGGATTTTAAATGTGGAGCCAGAATACTATATACTA 1742
v i i v v i iivi i iviiv v iv vi
L1_Mur3_orf2# 613 TCTACAGACTCTAAGAGACCACAGATGCCAGCCCAGACTACTATACCCAG 662
UnnamedSequen 1743 CAAAACTTTCAGTCA---TAGATAGAGAAAATGAGATATGCCATGTTACA 1789
i --- i ?i i v v --
L1_Mur3_orf2# 663 CAAAACTTTCAATCACNATAGATGGAGAAAANAAGACATTCCATGATA-- 710
UnnamedSequen 1790 TTAAAC-AAATTCAAACAATATCTTTCTACAAATTCAGTCCTACAGAAGA 1838
-- - i i v i i i
L1_Mur3_orf2# 711 --AAACCAAATTTAAGCAATATCTATCTACAAATCCAGCCCTACAGAAGG 758
UnnamedSequen 1839 TGCTAGAAGGAGAACTTCA-CGTGATG--GTTAAC---TACACCCCTGAA 1882
i i i - v i v -- ---i vv
L1_Mur3_orf2# 759 TACTAGAAGGAAAACTCCAACCTAAAGAGGTTAACGNCCACACCCAAGAA 808
UnnamedSequen 1883 AACATA-GGAATAAATAATCTTATACCAGTAATACCAAA---GGGAAACA 1928
i - ii v i - i ---
L1_Mur3_orf2# 809 AACACAAGGAATAAATAATCCCAGACCAGCAA-ATCAAAAGAGGGAAACA 857
UnnamedSequen 1929 CAGACACACACAC--------ACATTCTGACAC-AATCA-CAAA----G 1963
?? - -------- vvv i v- - ?----
L1_Mur3_orf2# 858 CANNCACAC-CACCACCAACAACAAAATAACAGGAATCAACAANCACTG 905
Matrix = 20p35g.matrix
Kimura (with divCpGMod) = 23.68
Transitions / transversions = 1.76 (60/34)
Gap_init rate = 0.05 (23 / 461), avg. gap size = 1.91 (44 / 23)
+ 30 0.0 0.0 0.0 UnnamedSequence 1964 1989 (925) + (AC)n Simple_repeat 1 26 (0) 3
ANNOTATION EVIDENCE:
30 0.00 0.00 0.00 UnnamedSequence 1964 1989 925 + (AC)n Simple_repeat 1 26 0
30 0.00 0.00 0.00 UnnamedSequence 1964 1989 (925) (AC)n#Simple_repeat 1 26 (0) c_b1s251i0
UnnamedSequen 1964 ACACACACACACACACACACACACAC 1989
(AC)n#Simple_ 1 ACACACACACACACACACACACACAC 26
Matrix = Unknown
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 25), avg. gap size = 0.0 (0 / 0)
+ 5290 20.2 5.7 1.7 UnnamedSequence 1990 2902 (12) + L1_Mur3 LINE/L1 2108 3044 (2836) 2
ANNOTATION EVIDENCE:
5290 20.25 5.67 1.68 UnnamedSequence 1990 2902 12 + L1_Mur3_orf2 LINE/L1 906 1842 2836
5290 20.25 5.67 1.68 UnnamedSequence 1990 2902 (12) L1_Mur3_orf2#LINE/L1 906 1842 (2836) m_b1s551i4
UnnamedSequen 1990 TAGT--ACATC---CAACTATCACTGGTTTCA-TTGCCCAATTAAAAAGA 2033
vi -- i --- - v i - v -
L1_Mur3_orf2# 906 TCATTGATATCTCTCAAC-ATCAATGGTCTCAATTCCCCAAT-AAAAAGA 953
UnnamedSequen 2034 TCCAGGCTCACAGAATGGATATCAAAACAGGATCCATCTTCCTGCAGCAT 2083
iv i v iiv i i v
L1_Mur3_orf2# 954 CACAGACTAACAGAATGGATGCGAAAACAGGATCCATCCTTCTGCTGCAT 1003
UnnamedSequen 2084 ACAAGAAATATACCTCAATATAAATGATAGATATTACTTCATGGTAAAGA 2133
v i i i v v i i i v ii
L1_Mur3_orf2# 1004 CCAAGAAACACACCTCAACATCAAGGATAGACATCACCTCAGGGTAAAAG 1053
UnnamedSequen 2134 GATGATAAAAGAAATTCCAAGCAAATAGACCTAAGAAGCAAGCTGGTATA 2183
? iv v i i i
L1_Mur3_orf2# 1054 GNTGGAAAAAGATATTCCAAGCAAATGGACCCAAGAAGCAAGCTGGTGTA 1103
UnnamedSequen 2184 GACATTTTAATATCTAA--AAATAGAATTAAAATC-----TAAT-AGAA- 2224
v i -- v v i ----- - -
L1_Mur3_orf2# 1104 GCCATTTTAATATCTGACAAAATAGACTTCAAACCAAAACTAATCAGAAG 1153
UnnamedSequen 2225 AGA-AGCGAAGAGCATCCTATATACTCATTTAAGAAAATGTC-ACCAAAT 2272
- v ii -- i iv i vi - iv
L1_Mur3_orf2# 1154 AGATAGGGAAGGACA--CTACATACTCATCAAAGGAAAAATCCACCAAGA 1201
UnnamedSequen 2273 GG-CATTTCAATATTTTATATCTATTCCTCAAATATAAAGAATCTCAAGT 2321
- ? vi v i v ?i i i i ivv i
L1_Mur3_orf2# 1202 GGACATTNCAATTCTTAACATCTATGCNCCAAACACAAGGGCACCCAAGT 1251
UnnamedSequen 2322 TTGTAAAAGAAACCTTACAAAAACTTAAATCACAT--------------- 2356
i vi v v i ---------------
L1_Mur3_orf2# 1252 TCGTAAAAGAAACACTACTACAGCTTAAATCACATATTGACCCTCACACA 1301
UnnamedSequen 2357 -TGATAATGTGAGACG-CAGTATCTCTCTCTCACCAATGGATAGGCCATT 2404
- i v v- i i i v i i i i
L1_Mur3_orf2# 1302 NTGATAGTGGGAGACTTCAATACCCCACTCTCACCAATAGACAGGTCATC 1351
UnnamedSequen 2405 CAGTCAAAAGCTAAATGGAGAAATGCTGGACCTAACAGACATTATGAATC 2454
v i ii v ? i i i
L1_Mur3_orf2# 1352 CAGACAAAAACTAAACAGAGAAATGCTGGAGCTAACNGACGTTATAAACC 1401
UnnamedSequen 2455 AAGTGGATTGAATTAATATTTACAGAACCTTTCACCCAAATGTGTAAAAG 2504
i iiv ivi v iiiiv i i
L1_Mur3_orf2# 1402 AAATGGACCTAACAGATATTTACAGAACATTTCACCCAAACACAAAAGAA 1451
UnnamedSequen 2505 TATACCTTTTTCTCAGTTCCCCATTGTACTTCCTCTAAAAATTTATCACA 2554
i iv i v v i i- v i
L1_Mur3_orf2# 1452 TATACCTTCTTCTCAGCACCTCATGGAACTTTCTCC-AAAATTGACCACA 1500
UnnamedSequen 2555 CACCCAGTCATGAAGAAAAGCTCAGCAGATTCAAGAAAATTAAAATAACT 2604
i i i v ii v iv i v i ?
L1_Mur3_orf2# 1501 TACTCGGACACAAAGCAAGTCTCAACAGATACAAGAAAATTGAAATAACN 1550
UnnamedSequen 2605 TCTTGAATCCTGTTAGATTTCTACAAATTAAAGCTAAATTTCAAAAGAAT 2654
i i v i i? iiv i ii ii ---------
L1_Mur3_orf2# 1551 CCCTGCATCCTATCNGACCACCACGGATTAAAGCTGGAT---------AT 1591
UnnamedSequen 2655 CAGAAACAATAGAATTCTTAC-TACTCATGGAAATTGAACAATTCTCTAC 2703
iv i vv -v i i ?
L1_Mur3_orf2# 1592 CAACAACAACAGAAAGCTTACAAACTCATGGAAACTGAACAACTCNCTAC 1641
UnnamedSequen 2704 TGAATGTAAAATATGACAAGACTAAAAT----AAAGAAATTAAGGACTTC 2749
v iv v vi ---- i i
L1_Mur3_orf2# 1642 TGAATGAAAAATGGGTCAAGACAGAAATNAAGAAAGAAATTAAAGACTTT 1691
UnnamedSequen 2750 TTTGAATTCAATAAAAATGAATATACAGAATATCCAAACTTACGGGACCC 2799
i v ? i ? i iv i i v
L1_Mur3_orf2# 1692 CTAGAATTNAATGAAAATGAANACACAACATACCCAAACTTATGGGACAC 1741
UnnamedSequen 2800 AAGGAAAAACAGTGCTAAGAGGAAAATTTGTAATACTAAGCTCCTACATT 2849
v - i i v ? i ii ii iv ?
L1_Mur3_orf2# 1742 AATG-AAAGCGGTTCTAAGAGGNAAGTTCATAGCACTAAGTGCCTACATN 1790
UnnamedSequen 2850 AAAAGAAAATGTACAGACTTCATATTAGCAACTTAACAGC-CACCTAAAA 2898
-- ? v v ii i - i
L1_Mur3_orf2# 1791 AAA--AAANTGGAGAGATCTCATACTAGCAACTTAACAGCACACCTGAAA 1838
UnnamedSequen 2899 GCTC 2902
L1_Mur3_orf2# 1839 GCTC 1842
Matrix = 20p35g.matrix
Kimura (with divCpGMod) = 23.68
Transitions / transversions = 1.86 (117/63)
Gap_init rate = 0.04 (33 / 912), avg. gap size = 1.76 (58 / 33)