
                                          position in query-                       -position in repeat-
          %    %    %    query                               C matching repeat     (left)  end   begin  linkage
+ score  div. del. ins.  sequence         begin  end  (left) + repeat   class/fami begin   end   (left) id/graphic

+  437   18.8  2.5  1.2  UnnamedSequence      4    84  (120) C ID4      SINE/ID       (0)     83      2   1

ANNOTATION EVIDENCE:
  437  18.75 2.47 1.22  UnnamedSequence      4    84    120 C ID4      SINE/ID         2     83      0    
437 18.75 2.47 1.22 UnnamedSequence 4 84 (120) C ID4#SINE/ID (0) 83 2 c_b1s355i0

  UnnamedSequen          4 TTCTTTTCCAGTACTGGGAGGTTGAACCCAGGGCCTTGTGCA--CTAAGC 51
                             i    v i  i     - i i             i i   --   i  
C ID4#SINE/ID           83 TTTTTTTGCGGTGCTGGG-GATCGAACCCAGGGCCTCGCGCATGCTAGGC 35

  UnnamedSequen         52 AAGTGTTCTACCATTGAGCTGCACTCCCAGCCC 84
                              i i       i      i  ii        
C ID4#SINE/ID           34 AAGCGCTCTACCACTGAGCTACATCCCCAGCCC 2

Matrix = 18p43g.matrix
Kimura (with divCpGMod) = 15.02
Transitions / transversions = 14.00 (14/1)
Gap_init rate = 0.03 (2 / 80), avg. gap size = 1.50 (3 / 2)

+  350   21.8  1.0  6.5  UnnamedSequence    102   199    (5) C PB1D11   SINE/Alu      (8)    110     18   2

ANNOTATION EVIDENCE:
  350  21.82 1.02 6.45  UnnamedSequence    102   199      5 C PB1D11   SINE/Alu       18    110      8    
350 21.82 1.02 6.45 UnnamedSequence 102 199 (5) C PB1D11#SINE/Alu (8) 110 18 m_b1s501i0

  UnnamedSequen        102 TTTTGAGACAGGGTCTCATTAAGTTGTGCGGGCTGCCTGTGGCCTCAAAT 151
                              ?             ii  v    iv i   ------       i  i
C PB1D11#SINE/A        110 TTTNGAGACAGGGTCTCGCTATGTTGCCCAGGC------TGGCCTCGAAC 67

  UnnamedSequen        152 TTGGGTTTCTCATGTCTCAGCCT-CCGAGTCCCTGGCATTAAAGGTGTG 199
                            i v v i   v  i        -      vv    v    v   ii  
C PB1D11#SINE/A         66 TCGCGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATG 18

Matrix = 25p43g.matrix
Kimura (with divCpGMod) = 22.03
Transitions / transversions = 1.22 (11/9)
Gap_init rate = 0.07 (7 / 97), avg. gap size = 1.00 (7 / 7)