RepeatProteinMask Completed 11-Dec-2024 00:04:28 PST
Identifying Simple and Low Complexity Repeats...(masking turned off)
- Tandem Repeats: 12
Masking Repeat Proteins...
- Protein Hits = 75
Done!
10.38user 1.14system 0:11.59elapsed 99%CPU (0avgtext+0avgdata 797996maxresident)k
120inputs+1744outputs (0major+749396minor)pagefaults 0swaps
Masked Sequence
pValue Score Method SeqID Begin End Repeat Type Begin End
7.04e-02 26 WUBlastX Bta12326 5 103 - Copia-16_BG LTR/Copia 566 597
3.99e-03 29 WUBlastX Bta12326 325 396 - BEL-233_AA LTR/Pao 310 333
3.99e-03 20 WUBlastX Bta12326 2881 3021 + ERV8_MD_pol LTR/ERV1 191 236
3.00e-03 31 WUBlastX Bta12326 3181 3243 + Gypsy-45_STu LTR/Gypsy 1284 1304
6.98e-03 28 WUBlastX Bta12326 3909 3968 + EnSpm4_SB_p1 DNA/CMC-EnSpm 896 915
2.27e-02 27 WUBlastX Bta12326 4710 4769 - L1-12_Mad_gag LINE/L1 50 69
1.97e-01 21 WUBlastX Bta12326 4750 4791 - TLC1 LTR/Copia 5 18
1.89e-01 21 WUBlastX Bta12326 5475 5534 - 3738337_Ath_pol LINE/L1 486 505
1.39e-02 25 WUBlastX Bta12326 5872 5919 - EnSpm-1_Mad DNA/CMC-EnSpm 1012 1027
1.49e-02 20 WUBlastX Bta12326 6778 6912 - rn_179-105_IR LTR/Copia 830 874
1.49e-02 24 WUBlastX Bta12326 7924 8025 + I-2_DWi_pol LINE/I 565 591
4.99e-03 35 WUBlastX Bta12326 8721 8843 - Kolobok-20_HMa_ DNA/Kolobok-Hyd 177 213
6.98e-03 26 WUBlastX Bta12326 9438 9515 - Gypsy45_DR LTR/Gypsy 1322 1347
5.35e-02 25 WUBlastX Bta12326 12327 12392 - Copia-10_SMo LTR/Copia 103 124
2.00e-03 24 WUBlastX Bta12326 12790 12933 - Mariner-6_DY_tp DNA/TcMar-Tc1 172 219
9.95e-03 24 WUBlastX Bta12326 12931 13005 + EnSpm-1_TA DNA/CMC-EnSpm 1062 1086
6.67e-01 22 WUBlastX Bta12326 13716 13751 + Copia-82_ST LTR/Copia 753 764
3.00e-03 20 WUBlastX Bta12326 14684 14770 + Copia-1_Ano LTR/Copia 537 574
7.00e-04 30 WUBlastX Bta12326 14869 14970 - CR1-11_NV_pol LINE/Rex-Babar 45 76
7.97e-03 26 WUBlastX Bta12326 14956 15033 + Helitron-5_NVi_ RC/Helitron 1116 1141
8.96e-03 22 WUBlastX Bta12326 15256 15333 + 93% 423 448
5.98e-03 25 WUBlastX Bta12326 15494 15607 + Copia-10_SMo LTR/Copia 344 377
2.27e-02 21 WUBlastX Bta12326 16607 16687 - BEL-14_DP LTR/Pao 1208 1234
1.88e-02 21 WUBlastX Bta12326 16989 17054 + Gypsy8_DR_pol LTR/Gypsy 409 426
1.59e-02 27 WUBlastX Bta12326 17016 17060 + CER2_CE_pol LTR/Gypsy 142 156
1.59e-02 32 WUBlastX Bta12326 18781 18813 - Copia-2_BD LTR/Copia 987 997
8.78e-01 21 WUBlastX Bta12326 19263 19298 - Copia-7_DPu LTR/Copia 1173 1184
5.98e-03 33 WUBlastX Bta12326 19410 19478 - Jockey-3_DPer_p LINE/Jockey 1079 1101
2.27e-02 21 WUBlastX Bta12326 21522 21593 + 17564434_Cel_po LINE/CR1 975 1004
2.37e-02 20 WUBlastX Bta12326 21993 22097 - IS4EU-1_NV_ex DNA/PIF-ISL2EU 544 579
2.74e-01 22 WUBlastX Bta12326 23533 23631 - Academ-1_DPu_tp DNA/Academ 913 943
2.00e-03 27 WUBlastX Bta12326 24010 24135 + Penelope3_XT_po LINE/Penelope 207 248
1.49e-02 21 WUBlastX Bta12326 24501 24596 + 3738337_Ath_pol LINE/L1 910 941
1.98e-02 24 WUBlastX Bta12326 24823 24969 + Vandal7_tp DNA/MuLE-MuDR 481 534
7.00e-04 24 WUBlastX Bta12326 25200 25310 - Copia1_DM LTR/Copia 597 634
3.00e-03 37 WUBlastX Bta12326 26148 26321 + ATCopia92 LTR/Copia 1173 1230
5.98e-03 23 WUBlastX Bta12326 26216 26428 - Odin-3_pol LINE/Odin 507 568
1.09e-02 25 WUBlastX Bta12326 26383 26502 - Copia-135_SB LTR/Copia 342 381
9.95e-03 25 WUBlastX Bta12326 26436 26534 - Gypsy-12_DWil LTR/Gypsy 542 574
5.07e-02 20 WUBlastX Bta12326 26641 26685 + Copia-20_GM LTR/Copia 348 362
1.29e-02 24 WUBlastX Bta12326 27209 27286 - Copia-63_MLP LTR/Copia 1138 1163
2.86e-02 31 WUBlastX Bta12326 27243 27287 + Gypsy-45_STu LTR/Gypsy 516 530
7.97e-03 25 WUBlastX Bta12326 27672 27752 - Copia-10_PSo LTR/Copia 749 775
6.98e-03 25 WUBlastX Bta12326 29984 30121 + HERV15_gag LTR/ERV1 2 48
1.59e-02 25 WUBlastX Bta12326 31358 31423 - Penelope-7_HM_g LINE/Penelope 136 157
3.99e-03 27 WUBlastX Bta12326 31708 31770 + Copia-39_ZM LTR/Copia 352 372
1.19e-02 31 WUBlastX Bta12326 31938 32033 - Copia-2_BG LTR/Copia 257 288
2.00e-03 20 WUBlastX Bta12326 32101 32277 - CR1-3_BF_pol LINE/CR1 685 737
2.18e-02 21 WUBlastX Bta12326 33217 33273 + Copia-16_BG LTR/Copia 97 115
3.99e-03 23 WUBlastX Bta12326 34044 34154 - REX1-2_AFC_pol LINE/Rex-Babar 610 646
2.08e-02 20 WUBlastX Bta12326 35082 35132 + KibiTn1_pol LINE/L1-Tx1 382 398
1.19e-02 29 WUBlastX Bta12326 35309 35413 - Gypsy-30_DWil LTR/Gypsy 931 965
6.98e-03 33 WUBlastX Bta12326 35763 35897 + Gypsy4_Dpse_gag LTR/Gypsy 154 192
1.00e-03 20 WUBlastX Bta12326 37459 37602 - Copia2 LTR/Copia 522 569
3.00e-03 20 WUBlastX Bta12326 38509 38610 - Transib1_AG DNA/CMC-Transib 198 226
1.49e-02 43 WUBlastX Bta12326 41147 41296 - L1-3_CPa_pol LINE/L1 284 339
1.59e-02 31 WUBlastX Bta12326 41313 41366 + IAPEY3_pol LTR/ERVK 122 139
7.97e-03 21 WUBlastX Bta12326 41497 41595 - Mariner-15_DRh_ DNA/TcMar-Tc1 66 98
5.98e-03 26 WUBlastX Bta12326 41554 41667 - PrD37D_tp DNA/TcMar-Tc1 50 87
6.98e-03 26 WUBlastX Bta12326 42336 42443 - Gypsy1_OS_pol LTR/Gypsy 611 646
2.00e-03 25 WUBlastX Bta12326 43452 43526 - Gypsy-7_ST LTR/Gypsy 889 913
1.04e-01 22 WUBlastX Bta12326 44641 44700 + Copia-3_BD LTR/Copia 747 767
1.22e-01 20 WUBlastX Bta12326 44673 44783 + Copia2_Dpse LTR/Copia 524 560
1.00e-03 25 WUBlastX Bta12326 45211 45276 + BEL-21_DAn LTR/Pao 192 213
8.96e-03 30 WUBlastX Bta12326 45614 45670 + Copia-4_NV LTR/Copia 1210 1228
1.59e-02 28 WUBlastX Bta12326 47530 47634 + CR1-53_BF_pol LINE/CR1-Zenon 276 310
3.73e-02 21 WUBlastX Bta12326 48428 48478 - BEL-14_DP LTR/Pao 247 268
6.98e-03 26 WUBlastX Bta12326 49503 49559 - Gypsy-42_AMi LTR/Gypsy 588 606
3.99e-03 20 WUBlastX Bta12326 51261 51332 - BEL-1_DPer LTR/Pao 509 532
1.29e-02 21 WUBlastX Bta12326 53354 53500 + BEL1_MH LTR/Pao 1619 1669
1.88e-02 20 WUBlastX Bta12326 55517 55552 - Copia-88_Mad LTR/Copia 414 425
2.00e-03 29 WUBlastX Bta12326 55739 55882 - Gypsy-28_BG_pol LTR/Gypsy 35 81
7.97e-03 39 WUBlastX Bta12326 56915 57076 - L1-92_Cis_pol LINE/L1 483 525
7.97e-03 23 WUBlastX Bta12326 57576 57680 - Crack-6_BF_pol LINE/L2 902 936
6.98e-03 24 WUBlastX Bta12326 57942 58127 - CR1-62_HM_gag LINE/CR1 119 180