FEAST: Fast Empirical Algorithms Suggesting Transcripts

An integration of five algorithms: ROAST, Greens, PASTA, CHOWDER and SPLAT.

Publications


Species-specific parameters and predictions

Species Freeze ROAST Greens PASTA CHOWDER SPLAT FEAST
human hg19 params, values params, values params, values params, values params, values values, predictions, track
human hg18 params, values params, values params, values params, values params, values values, predictions, track
chimp panTro2 params, values params, values params, values params, values params, values values, predictions, track
orang ponAbe2 params, values params, values params, values params, values params, values values, predictions, track
mouse mm9 params, values params, values params, values params, values params, values values, predictions, track
rat rn4 params, values params, values params, values params, values params, values values, predictions, track
cow bosTau4 params, values params, values params, values params, values params, values values, predictions, track
horse equCab2 params, values params, values params, values params, values params, values values, predictions, track
opossum monDom5 params, values params, values params, values params, values params, values values, predictions, track
platypus ornAna1 params, values params, values params, values params, values params, values values, predictions, track
chicken galGal3 params, values params, values params, values params, values params, values values, predictions, track
zebra-finch taeGut1 params, values params, values params, values params, values params, values values, predictions, track
Chlamidomonas Chlre4 params, values params, values params, values params, values params, values values, predictions, track
Arabidopsis TAIR10 params, values params, values params, values params, values params, values values, predictions, track

To use the custom FEAST track for the UCSC browser: Create a bookmark in your browser, pointing at one of the "track" links in the table above. Then, when viewing any region in the human genome via the UCSC genome browser, select that bookmark to add the FEAST predictions to your display. You'll typically need to do this just once per session.
Here are some additional, old versions of the FEAST track:

Software


Contact information

Please contact Gustavo Glusman with any queries, comments or suggestions.