RepeatMasker Web Server
RepeatMasker screens DNA sequences in FASTA format against the Repbase-derived RepeatMasker library of repetitive elements or against the Dfam database
and returns a masked query sequence ready for database
searches. RepeatMasker also generates a table annotating the masked regions.
Reference: A.F.A. Smit, R. Hubley & P. Green, unpublished data.
Current Version: open-4.0.5 ( RMLib: 20140131 & Dfam: 1.2 )
Check Current Queue Status
RepeatMasker "open-3.0" is licensed under the Open Source License v2.1.
To obtain a copy of the software to run locally ( on UNIX systems ) go here.
RepeatMasker written and supported by: Arian Smit & Robert Hubley
If you would like to mirror this site please send an email to
the web site manager (email@example.com).
Institute for Systems Biology
This server is made possible by funding from the National Human Genome Research
Institute (NHGRI grant # RO1 HG002939).