Pre-Masked Genomes Download

The following genomes were masked using the computing resources at UCSC. In some cases these datasets will be newer than the version available in the genome tracks at UCSC.

Human

HG18 - Mar 2006 - RepeatMasker open-3.1.9 - Repeat Library 20071204
- hg18.fa.out.gz
- hg18.fa.align.gz

Chimp

panTro2 - Jan 2006 - RepeatMasker open-3.2.4 - Repeat Library 20080521
- panTro2.fa.out.gz
- panTro2.fa.align.gz

Rhesus

rheMac2 - Jan 2006 - RepeatMasker open-3.1.9 - Repeat Library 20071204
- rheMac2.fa.out.gz
- rheMac2.fa.align.gz

Mouse

mm9 - Jul 2007 - RepeatMasker open-3.1.9 - Repeat Library 20071204
- mm9.fa.out.gz
- mm9.fa.align.gz

Rat

rn4 - Nov 2004 - RepeatMasker open-3.2.4 - Repeat Library 20080521
- rn4.fa.out.gz
- rn4.fa.align.gz

Cat

felCat3 - Mar 2006 - RepeatMasker open-3.1.9 - Repeat Library 20071204
- felCat3.fa.out.gz
- felCat3.fa.align.gz

Cow

bosTau4 - Oct 2007 - RepeatMasker open-3.1.9 - Repeat Library 20071204
- bosTau4.fa.out.gz
- bosTau4.fa.align.gz

Platypus

ornAna1 - Mar 2007 - RepeatMasker open-3.1.9 - Repeat Library 20071204
- ornAna1.fa.out.gz
- ornAna1.fa.align.gz

Opossum

monDom4 - Jan 2006 - RepeatMasker open-3.1.9 - Repeat Library 20071204
- monDom4.fa.out.gz
- monDom4.fa.align.gz

Chicken

galGal3 - May 2006 - RepeatMasker open-3.1.9 - Repeat Library 20071204
- galGal3.fa.out.gz
- galGal3.fa.align.gz

Arabidopsis

araTha5 - Jun 2004 - RepeatMasker open-3.1.9 - Repeat Library 20071204
- araTha5.fa.out.gz
- araTha5.fa.align.gz

Rice

orySat5 - Jan 2007 - RepeatMasker open-3.1.9 - Repeat Library 20071204
- orySat5.fa.out.gz
- orySat5.fa.align.gz

Institute for Systems Biology
This server is made possible by funding from the National Human Genome Research Institute (NIGRI grant # RO1 HG002939-01) 2003.